Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABZ559_RS02975 Genome accession   NZ_CP160400
Coordinates   584400..586202 (+) Length   600 a.a.
NCBI ID   WP_367007188.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 579400..591202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS02950 (ABZ559_02950) nagB 579975..580676 (+) 702 WP_367007184.1 glucosamine-6-phosphate deaminase -
  ABZ559_RS02955 (ABZ559_02955) - 580745..581092 (+) 348 WP_367007185.1 DUF2200 domain-containing protein -
  ABZ559_RS02960 (ABZ559_02960) - 581435..582391 (-) 957 WP_367007186.1 glutathione S-transferase family protein -
  ABZ559_RS02965 (ABZ559_02965) - 582488..583204 (+) 717 WP_367007187.1 pseudouridine synthase -
  ABZ559_RS02970 (ABZ559_02970) - 583436..584383 (+) 948 WP_367007615.1 competence protein CoiA family protein -
  ABZ559_RS02975 (ABZ559_02975) pepF 584400..586202 (+) 1803 WP_367007188.1 oligoendopeptidase F Regulator
  ABZ559_RS02980 (ABZ559_02980) - 586542..587189 (-) 648 WP_367007189.1 histidine phosphatase family protein -
  ABZ559_RS02985 (ABZ559_02985) - 587193..587669 (-) 477 WP_367007190.1 aminoacyl-tRNA deacylase -
  ABZ559_RS02990 (ABZ559_02990) thiT 587737..588294 (-) 558 WP_321058239.1 energy-coupled thiamine transporter ThiT -
  ABZ559_RS02995 (ABZ559_02995) - 588577..589422 (-) 846 WP_367007191.1 glycoside hydrolase family 25 protein -
  ABZ559_RS03000 (ABZ559_03000) - 589687..590733 (+) 1047 WP_367007192.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69072.07 Da        Isoelectric Point: 4.7264

>NTDB_id=1020921 ABZ559_RS02975 WP_367007188.1 584400..586202(+) (pepF) [Streptococcus sp. ZY19097]
MSDNRSHIDEKYTWDLSTVYVTDAAWEAEMEALTADIEDAKKYAGHLVESSKNLLEITEAELALSRRLEKAYVYASMKND
QDTTVAKYQEFQAKATALYAKYSEVFSFYEPEFMTLSKEDFAAFVAETPDLKKYAHFFEKIFRRQAHVLSQAEEELLAGA
GEIFGAAGETFEILDNADIVFPLVTDEKGEEVQLSHGNFISFMESKNRDIRKSAYEAMYSTYDQYQHTYAKTLQTNVKVH
NYNARVHKFASAREAALAANFIPESVYETLLETVNKHLPLLHRYVKLRQTILGLDDLKMYDIYTPLSKTDMSFTYEAALE
KAEEVLTVFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTREN
QPYVYGDYSLFLAEIASTTNENIMTETLLKEVEDDKQRFAILNHYLDGFKGTVFRQTQFAEFEHLIHKADQDGVVLTSEY
LNKLYADLNEKYYGLAKEDNPEIQFEWARIPHFYYNYYVYQYATGFAAASYLANKIVHGTQEDKDKYLDYLKAGNSDYSL
NVIAKAGVDMTTSDYLDAAFEVFEERLTELEDLVAKGAHK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1020921 ABZ559_RS02975 WP_367007188.1 584400..586202(+) (pepF) [Streptococcus sp. ZY19097]
ATGTCAGATAATCGCAGTCATATTGATGAAAAATATACTTGGGATTTGAGTACCGTTTATGTTACTGATGCAGCTTGGGA
AGCTGAAATGGAGGCTTTAACAGCCGACATTGAAGATGCTAAAAAGTATGCTGGTCATTTAGTGGAGTCAAGTAAGAATC
TACTTGAGATTACTGAGGCTGAATTGGCTCTGTCACGTCGTTTGGAAAAGGCTTATGTCTATGCTTCTATGAAGAATGAC
CAAGACACTACGGTGGCTAAGTATCAAGAATTTCAAGCTAAGGCAACGGCGCTTTATGCCAAGTACTCAGAAGTATTTTC
ATTCTACGAACCTGAGTTTATGACCTTGTCTAAAGAGGATTTTGCAGCTTTTGTAGCAGAAACACCAGATTTGAAAAAGT
ATGCTCATTTCTTTGAAAAAATCTTCAGACGTCAAGCCCATGTTTTGTCACAAGCAGAAGAGGAATTATTGGCTGGCGCT
GGAGAAATCTTTGGTGCTGCTGGTGAAACTTTTGAGATTCTTGACAATGCCGATATCGTCTTTCCTTTGGTAACTGATGA
AAAAGGTGAGGAAGTGCAGCTGTCTCACGGAAATTTCATCAGTTTTATGGAATCCAAAAATCGTGATATTCGTAAATCTG
CTTATGAAGCTATGTACAGCACTTACGATCAATACCAACATACTTATGCCAAGACTCTGCAAACCAACGTCAAAGTCCAT
AATTACAATGCCCGCGTTCATAAATTCGCTTCTGCCCGTGAAGCGGCCTTAGCAGCTAACTTTATTCCAGAGAGCGTTTA
TGAGACCTTGCTTGAAACGGTCAATAAGCATTTGCCACTCTTGCACCGTTATGTTAAGTTACGTCAAACCATTCTTGGAC
TGGATGATTTGAAAATGTATGATATTTACACGCCTTTGTCTAAGACAGATATGAGTTTCACCTATGAAGCAGCACTTGAA
AAAGCAGAGGAAGTCCTGACTGTTTTTGGTAAGGATTATTCTGAGCGTGTTCATCGTGCTTTCACAGAACGCTGGATTGA
CGTTCATGTCAATAAAGGTAAACGTTCAGGAGCATATTCAGGAGGTTCTTACGACACCAATGCTTTCATGCTCCTCAACT
GGCAGGACACACTTGATAATCTCTATACCTTGGTGCATGAGACAGGTCACAGCTTACATTCGACCTTTACCCGTGAAAAT
CAGCCTTACGTCTATGGAGATTACAGCCTTTTCTTGGCAGAAATTGCCTCTACAACTAATGAAAATATCATGACAGAAAC
TTTGCTTAAGGAAGTCGAAGATGACAAGCAACGCTTTGCCATTCTCAATCATTACCTTGATGGTTTCAAAGGAACAGTAT
TCCGTCAAACACAATTTGCGGAGTTTGAGCATTTAATTCATAAGGCTGACCAAGATGGAGTTGTTTTGACTAGTGAATAT
CTCAATAAACTCTACGCTGACCTTAATGAAAAATATTACGGTTTGGCGAAAGAAGATAACCCAGAAATTCAGTTTGAGTG
GGCGCGTATCCCGCATTTCTACTATAATTACTATGTTTATCAGTATGCCACAGGTTTTGCGGCTGCTAGTTATCTTGCTA
ACAAAATTGTACACGGTACTCAAGAAGATAAGGACAAATATCTTGATTACCTCAAGGCTGGTAACTCAGACTACTCGCTT
AACGTTATTGCCAAAGCTGGTGTTGACATGACAACGAGTGACTATTTAGACGCAGCTTTCGAAGTCTTTGAAGAACGTTT
GACGGAATTAGAAGATTTGGTTGCTAAAGGTGCTCACAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.619

99.833

0.715

Multiple sequence alignment