Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ABZ559_RS00455 Genome accession   NZ_CP160400
Coordinates   88934..89653 (-) Length   239 a.a.
NCBI ID   WP_367006787.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 83934..94653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS00435 (ABZ559_00435) - 86077..86208 (+) 132 WP_273413709.1 hypothetical protein -
  ABZ559_RS00440 (ABZ559_00440) - 86208..86711 (+) 504 WP_018376116.1 GNAT family N-acetyltransferase -
  ABZ559_RS00445 (ABZ559_00445) nrdG 86721..87332 (+) 612 WP_273413716.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  ABZ559_RS00450 (ABZ559_00450) yaaA 87714..88445 (-) 732 WP_367006786.1 peroxide stress protein YaaA -
  ABZ559_RS00455 (ABZ559_00455) treR 88934..89653 (-) 720 WP_367006787.1 trehalose operon repressor Regulator
  ABZ559_RS00460 (ABZ559_00460) treP 89898..91868 (+) 1971 WP_367006790.1 PTS system trehalose-specific EIIBC component -
  ABZ559_RS00465 (ABZ559_00465) treC 91968..93587 (+) 1620 WP_367006792.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27550.37 Da        Isoelectric Point: 7.6337

>NTDB_id=1020904 ABZ559_RS00455 WP_367006787.1 88934..89653(-) (treR) [Streptococcus sp. ZY19097]
MKKYEHIFKQLEESIHNGSYLVGDYLPTESELTQIYQASRDTIRKALSLLAEAGLIQKRHGSGSQIIKHEHINFPVSELT
SYQELVNKLGINSKTNVISIDKVIINKALNDLTGFPINSLVWRITRQRVVDGTASVLDIDYLSKAIVPNFTREIAERSIY
NYLENQLHLDIAYAQKEITIDQLTEQDKILLDIGSEHHVVSVKSKVYLTTNQQFQFTESRHKLEKFKFIDFARRKTDTQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1020904 ABZ559_RS00455 WP_367006787.1 88934..89653(-) (treR) [Streptococcus sp. ZY19097]
ATGAAAAAATATGAGCATATCTTTAAACAACTCGAAGAATCCATCCACAACGGCAGCTACCTCGTTGGAGACTACCTCCC
AACCGAATCCGAACTAACTCAGATTTACCAAGCTAGTCGCGATACGATTCGTAAAGCCCTATCACTACTAGCTGAAGCAG
GGTTAATCCAAAAACGCCATGGATCCGGTTCTCAAATCATCAAGCACGAACACATCAATTTTCCAGTCTCAGAGCTTACC
AGTTACCAAGAACTTGTCAATAAATTGGGAATAAACTCAAAAACAAATGTTATCAGCATTGATAAAGTAATTATCAACAA
GGCACTAAATGACTTAACAGGTTTCCCTATTAACAGTCTTGTTTGGCGCATAACGCGTCAAAGAGTTGTTGATGGGACAG
CCTCCGTTCTTGATATTGATTACCTTAGCAAGGCTATTGTCCCAAATTTCACACGAGAAATAGCAGAGCGTTCAATCTAT
AATTACTTAGAAAATCAATTGCATTTAGACATCGCTTATGCCCAAAAAGAAATTACAATTGATCAACTTACTGAACAAGA
TAAAATTCTCCTTGACATCGGCTCTGAACATCATGTCGTTTCTGTTAAATCAAAAGTCTATCTCACCACTAATCAGCAAT
TTCAATTCACTGAGAGCCGACACAAACTTGAAAAATTTAAATTTATTGATTTTGCTCGGAGAAAAACCGATACTCAATGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

70.042

99.163

0.695

Multiple sequence alignment