Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABV589_RS17165 Genome accession   NZ_CP160398
Coordinates   3785632..3787851 (-) Length   739 a.a.
NCBI ID   WP_367082674.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3780632..3792851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS17145 (ABV589_17145) hslU 3780696..3782033 (-) 1338 WP_007968354.1 ATP-dependent protease ATPase subunit HslU -
  ABV589_RS17150 (ABV589_17150) hslV 3782089..3782619 (-) 531 WP_007968352.1 ATP-dependent protease subunit HslV -
  ABV589_RS17155 (ABV589_17155) - 3782925..3783632 (-) 708 WP_007968349.1 SPOR domain-containing protein -
  ABV589_RS17160 (ABV589_17160) argS 3783634..3785370 (-) 1737 WP_367082672.1 arginine--tRNA ligase -
  ABV589_RS17165 (ABV589_17165) priA 3785632..3787851 (-) 2220 WP_367082674.1 primosomal protein N' Machinery gene
  ABV589_RS17170 (ABV589_17170) rpmE 3788136..3788351 (+) 216 WP_007968345.1 50S ribosomal protein L31 -
  ABV589_RS17175 (ABV589_17175) - 3788393..3789175 (+) 783 WP_367082676.1 thermonuclease family protein -
  ABV589_RS17180 (ABV589_17180) - 3789359..3790627 (+) 1269 WP_007968342.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81929.36 Da        Isoelectric Point: 8.6671

>NTDB_id=1020870 ABV589_RS17165 WP_367082674.1 3785632..3787851(-) (priA) [Pseudomonas sp. HOU2]
MPDAILRLALPSPLRRLFDYRAPAGVSRAQLQPGMRLRVPFGRREMIGILVEVTDTSDVPLEKLKPALALLDAEPPLPPA
LFKLCLWTSQYYQHSLGDTLSWALPVLLRQGELAEARQERFWSVAPGASLDDPRIARAPRQREALSTLAQHPHGVAHQLL
SKLMLSKDSLDLLLAKGLVQVEIRRHAPGVRHEHWLAQPELPLNTEQRAAYEAIRAGFDSYHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGSATPSLESLHNAYTGRYGLLRLNERAGGARQPRFLRLDVKS
RPLDSGISGPMQQAIGQTLAAGQQVLVFLNRRGFAPTLLCHDCGWMSECSRCDARMTVHQRYGELRCHHCGNVERTPRQC
PKCNKVDLRPVGAGTERAEERLAILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGQPCILVGTQMLAKGHHFPRVTLVSI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVIIQTHLADHPLLVQLTEQGYFAFAEQALSERRAAGLPPFSHL
ALLRAEAHKPGQAEGFLDEACSAAERLLAEQNLGGIELLGPVPAPMERRAGRYRAQLLVQAAARAPLHRLLASWLLVLEQ
MPSGRAVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1020870 ABV589_RS17165 WP_367082674.1 3785632..3787851(-) (priA) [Pseudomonas sp. HOU2]
GTGCCCGACGCCATTCTGCGCCTCGCCCTGCCTTCGCCCCTGCGCCGCCTGTTCGATTATCGGGCGCCGGCCGGGGTATC
GCGTGCCCAGTTGCAGCCGGGCATGCGCCTGCGTGTGCCGTTCGGGCGCCGGGAAATGATCGGGATCCTGGTCGAAGTCA
CCGACACCAGCGATGTACCGCTGGAAAAACTCAAACCGGCGCTGGCCCTGCTCGATGCCGAGCCGCCGCTGCCGCCCGCG
CTGTTCAAGCTGTGCCTGTGGACATCCCAGTATTATCAGCACAGCCTCGGCGACACCCTGAGCTGGGCGCTGCCGGTTTT
GCTGCGACAGGGCGAACTGGCTGAAGCCCGTCAGGAGCGCTTTTGGTCGGTTGCGCCCGGTGCCAGCCTCGATGATCCGC
GCATCGCCCGCGCCCCGCGCCAGCGTGAAGCATTGTCGACGCTGGCGCAGCACCCCCACGGCGTGGCCCATCAGTTGCTG
AGCAAGCTGATGCTGAGCAAGGACAGCCTCGACCTGCTGCTGGCCAAGGGACTGGTGCAAGTGGAGATCCGCCGGCACGC
CCCCGGCGTGCGCCATGAACACTGGCTGGCGCAACCGGAACTGCCGCTCAACACCGAACAACGCGCCGCTTACGAAGCGA
TCCGCGCCGGGTTCGACAGTTATCACGCGTTTCTGCTGGCCGGGGTCACCGGCAGCGGCAAGACCGAAGTCTATCTGCAG
CTGATCCGCGAAACCCTCGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCCGAGATCAACCTCGGCCCGCAGACTCTGGC
GCGTTTCGAGCAGCGCTTCAATGCGCGCATCGCCCTGCTGCATTCGGCGGTCAACGACCGTGAGCGCCTCGACGCCTGGC
TCGCTGCCCGCGACGGCGAGGCCGACATTATTATCGGCACCCGCTCGGCGCTGTTCACCCCGATGAAAAACCCGGGACTG
ATCATCATCGACGAAGAACACGACGGCTCCTATAAACAGCAGGAAGGCCTGCGCTACCACGCCCGGGATCTGGCGCTGGT
GCGTGCGCGCCAGGAAAACATCCCGATCGTCCTCGGCTCCGCCACGCCGTCGCTGGAAAGCCTGCACAACGCCTACACCG
GTCGTTATGGCCTGCTGCGCCTGAACGAGCGCGCTGGCGGCGCCAGGCAACCTCGGTTCCTGCGACTGGACGTGAAAAGC
CGCCCGCTGGACAGCGGCATTTCCGGGCCGATGCAGCAAGCCATCGGCCAGACCCTCGCAGCGGGCCAACAGGTGCTGGT
GTTCCTCAACCGGCGCGGCTTTGCGCCGACATTGCTGTGCCACGATTGCGGCTGGATGTCCGAATGCTCACGCTGCGACG
CGCGGATGACCGTGCACCAGCGCTACGGTGAGCTGCGCTGTCATCACTGCGGCAACGTCGAACGCACGCCGCGCCAGTGC
CCCAAGTGCAACAAGGTCGATCTGCGGCCGGTGGGCGCCGGCACCGAACGCGCCGAAGAACGCCTGGCGATTCTGTTCCC
GGACTACCCGGTGCTGCGGGTCGACCGCGACAGCACTTCGCGCAAGGACGCGATGAATCAACTGTTCGCAACGATTCAGA
AGGGCCAGCCATGCATTCTGGTCGGCACCCAGATGTTGGCCAAGGGGCACCACTTCCCGCGGGTCACGCTGGTGTCGATT
CTGGATGCCGACGGCGGGCTGTTTTCCGGCGACTTCCGCGCCAGCGAGCGCATGGCACAGTTGATCGTGCAGGTCGCGGG
GCGCGCCGGGCGGGCCGAGGAGCCGGGCAAGGTGATCATCCAGACGCATTTGGCCGACCATCCTCTATTGGTGCAACTCA
CCGAGCAGGGCTACTTCGCCTTTGCCGAGCAGGCCTTGAGTGAGCGCCGCGCGGCGGGGCTGCCGCCGTTTTCACACCTG
GCGCTGTTACGCGCCGAAGCGCACAAACCGGGGCAGGCGGAAGGTTTTCTCGATGAGGCATGCAGCGCCGCCGAGCGCTT
GCTGGCTGAACAGAATCTGGGCGGGATCGAATTGCTCGGACCGGTGCCGGCACCGATGGAGCGCCGTGCGGGGCGCTATC
GGGCACAGCTGTTGGTGCAGGCGGCGGCGCGGGCACCCTTGCATCGACTGCTCGCCAGCTGGTTGCTGGTGCTGGAGCAG
ATGCCGAGCGGGCGCGCGGTGCGCTGGTCGCTGGATGTCGATCCGGTGGATTTGTATTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(207-367)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

47.849

100

0.482

Multiple sequence alignment