Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABV589_RS10705 Genome accession   NZ_CP160398
Coordinates   2387467..2388834 (-) Length   455 a.a.
NCBI ID   WP_367085784.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2382467..2393834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS10680 (ABV589_10680) - 2382510..2383220 (+) 711 WP_367085781.1 GntR family transcriptional regulator -
  ABV589_RS10685 (ABV589_10685) yjiA 2383343..2384314 (-) 972 WP_367085782.1 GTPase -
  ABV589_RS10690 (ABV589_10690) - 2384466..2384663 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  ABV589_RS10695 (ABV589_10695) - 2384679..2386745 (-) 2067 WP_007963766.1 carbon starvation CstA family protein -
  ABV589_RS10700 (ABV589_10700) - 2386905..2387273 (+) 369 WP_367085783.1 PilZ domain-containing protein -
  ABV589_RS10705 (ABV589_10705) radA 2387467..2388834 (-) 1368 WP_367085784.1 DNA repair protein RadA Machinery gene
  ABV589_RS10710 (ABV589_10710) - 2388878..2389414 (-) 537 WP_367085785.1 ankyrin repeat domain-containing protein -
  ABV589_RS10715 (ABV589_10715) katB 2389475..2391016 (-) 1542 WP_367085787.1 catalase KatB -
  ABV589_RS10720 (ABV589_10720) mscL 2391303..2391716 (+) 414 WP_007963760.1 large-conductance mechanosensitive channel protein MscL -
  ABV589_RS10725 (ABV589_10725) - 2391758..2392534 (-) 777 WP_367085788.1 ferredoxin--NADP reductase -
  ABV589_RS10730 (ABV589_10730) - 2392865..2393593 (+) 729 WP_367085790.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48743.23 Da        Isoelectric Point: 6.8987

>NTDB_id=1020860 ABV589_RS10705 WP_367085784.1 2387467..2388834(-) (radA) [Pseudomonas sp. HOU2]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPVPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1020860 ABV589_RS10705 WP_367085784.1 2387467..2388834(-) (radA) [Pseudomonas sp. HOU2]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG
CGGCGCCTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGGGCCACGGCGCCCACCGGACGTACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCATCGAGGAGATTCCGCGCTTCTCCACCGCGTCCGGTGAACTG
GACCGGGTTTTGGGTGGTGGTCTGGTCGACGGCTCGGTGGTGCTGATCGGTGGTGACCCGGGCATCGGCAAGTCGACGAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGAGTATGCCGGCGCTGTACGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CGATGCGTGCCCGGCGTCTGGGTTTGCCTCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACCATTTTCACCGAACAGCTGCAATCAGCGCC
GGGTGGCGTCTCGCAGGTACGTGAGAGCGCGGCCTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACAGCGATTTTCCTCG
TCGGTCACGTCACCAAGGAAGGCGCGCTCGCCGGCCCCAGGGTGCTGGAGCACATGGTCGATACCGTGCTCTATTTTGAA
GGCGAGTCCGATGGGCGTCTGCGCTTGCTGCGGGCGGTGAAGAACCGTTTCGGTGCGGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCATCTGGCC
AATCCGCGCCGGGTTACGCTGGGTCTGGACCAGAACCGCCTGGCGATGTTGCTCGCTGTGCTGCACCGCCACGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTCAACGTGGTCGGCGGGGTGAAAGTGCTGGAAACGGCTTCTGACCTGGCGCTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAACCGGCCGGTGCCGCATGATCTGCTGGTGTTTGGCGAAGTCGGTTTGTCTGGC
GAAGTGCGTCCGGTGCCGAGTGGGCAGGAGCGTCTGAAGGAAGCGGCCAAACATGGCTTCAAACGCGCGATCGTGCCCAA
GGGCAATGCGCCGAAAGAGGCGCCGCCGGGGTTGCAGATCATTGCTGTGACGCGGCTGGAACAAGCGCTCGACGCACTCT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464

Multiple sequence alignment