Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB1F75_RS15245 Genome accession   NZ_CP160396
Coordinates   2957736..2958314 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2952736..2963314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS15210 (AB1F75_15210) lepB 2952743..2953249 (-) 507 WP_003233128.1 signal peptidase I -
  AB1F75_RS15215 (AB1F75_15215) yhjE 2953251..2953874 (-) 624 WP_010886465.1 VTT domain-containing protein -
  AB1F75_RS15220 (AB1F75_15220) - 2954026..2954397 (+) 372 WP_014476361.1 hypothetical protein -
  AB1F75_RS15225 (AB1F75_15225) yhjC 2954596..2954796 (+) 201 WP_015252421.1 DUF3311 domain-containing protein -
  AB1F75_RS15230 (AB1F75_15230) yhjB 2954793..2956262 (+) 1470 WP_015252422.1 sodium:solute symporter -
  AB1F75_RS15235 (AB1F75_15235) yhjA 2956306..2956575 (-) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  AB1F75_RS15240 (AB1F75_15240) yhxD 2956792..2957691 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  AB1F75_RS15245 (AB1F75_15245) comK 2957736..2958314 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AB1F75_RS15250 (AB1F75_15250) yhzC 2958607..2958840 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  AB1F75_RS15255 (AB1F75_15255) yhxC 2958868..2959725 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  AB1F75_RS15260 (AB1F75_15260) comW 2959837..2961366 (+) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  AB1F75_RS15265 (AB1F75_15265) hemAT 2961504..2962802 (+) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1020831 AB1F75_RS15245 WP_003245329.1 2957736..2958314(-) (comK) [Bacillus subtilis subsp. subtilis strain BSP1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1020831 AB1F75_RS15245 WP_003245329.1 2957736..2958314(-) (comK) [Bacillus subtilis subsp. subtilis strain BSP1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment