Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB1F75_RS09805 Genome accession   NZ_CP160396
Coordinates   1859589..1860209 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1854589..1865209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS09785 (AB1F75_09785) dnaD 1854879..1855577 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  AB1F75_RS09790 (AB1F75_09790) nth 1855596..1856255 (+) 660 WP_009967580.1 endonuclease III -
  AB1F75_RS09795 (AB1F75_09795) ypoC 1856252..1856746 (+) 495 WP_009967579.1 YpoC family protein -
  AB1F75_RS09800 (AB1F75_09800) ponA 1856823..1859567 (-) 2745 WP_015251829.1 transglycosylase domain-containing protein -
  AB1F75_RS09805 (AB1F75_09805) recU 1859589..1860209 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AB1F75_RS09810 (AB1F75_09810) yppC 1860250..1861212 (+) 963 WP_015251830.1 DUF2515 domain-containing protein -
  AB1F75_RS09815 (AB1F75_09815) sspM 1861237..1861341 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AB1F75_RS09820 (AB1F75_09820) yppD 1861540..1861785 (+) 246 WP_015251831.1 YppD family protein -
  AB1F75_RS09825 (AB1F75_09825) yppE 1861831..1862202 (+) 372 WP_003246080.1 YppE family protein -
  AB1F75_RS09830 (AB1F75_09830) yppF 1862241..1862429 (-) 189 WP_003230690.1 YppF family protein -
  AB1F75_RS09835 (AB1F75_09835) sppG 1862617..1862994 (+) 378 WP_015251832.1 YppG family protein -
  AB1F75_RS09840 (AB1F75_09840) ypqA 1863015..1863434 (-) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  AB1F75_RS09845 (AB1F75_09845) ptsA 1863572..1864078 (+) 507 WP_044052678.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1020813 AB1F75_RS09805 WP_004399067.1 1859589..1860209(-) (recU) [Bacillus subtilis subsp. subtilis strain BSP1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1020813 AB1F75_RS09805 WP_004399067.1 1859589..1860209(-) (recU) [Bacillus subtilis subsp. subtilis strain BSP1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment