Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB1F75_RS08815 Genome accession   NZ_CP160396
Coordinates   1682367..1683170 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677367..1688170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS08795 (AB1F75_08795) yqxC 1677475..1678321 (+) 847 Protein_1724 TlyA family RNA methyltransferase -
  AB1F75_RS08800 (AB1F75_08800) argR 1678419..1678868 (+) 450 WP_003230265.1 arginine repressor ArgR -
  AB1F75_RS08805 (AB1F75_08805) recN 1678905..1680635 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  AB1F75_RS08810 (AB1F75_08810) spoIVB 1680810..1682090 (+) 1281 WP_015251736.1 SpoIVB peptidase -
  AB1F75_RS08815 (AB1F75_08815) spo0A 1682367..1683170 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AB1F75_RS08820 (AB1F75_08820) yqiG 1683634..1684752 (-) 1119 WP_015251737.1 NADH-dependent flavin oxidoreductase -
  AB1F75_RS08825 (AB1F75_08825) - 1684825..1684977 (-) 153 WP_014480226.1 hypothetical protein -
  AB1F75_RS08830 (AB1F75_08830) - 1685286..1685582 (+) 297 WP_014480225.1 hypothetical protein -
  AB1F75_RS08835 (AB1F75_08835) yqiI 1685602..1686222 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  AB1F75_RS08840 (AB1F75_08840) glpQB 1686301..1687032 (+) 732 WP_015251738.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1020812 AB1F75_RS08815 WP_003226427.1 1682367..1683170(+) (spo0A) [Bacillus subtilis subsp. subtilis strain BSP1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1020812 AB1F75_RS08815 WP_003226427.1 1682367..1683170(+) (spo0A) [Bacillus subtilis subsp. subtilis strain BSP1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment