Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB1F75_RS08280 Genome accession   NZ_CP160396
Coordinates   1591470..1592237 (+) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1586470..1597237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS08250 (AB1F75_08250) pgpH 1586765..1588900 (+) 2136 WP_015251683.1 cyclic-di-AMP phosphodiesterase PgpH -
  AB1F75_RS08255 (AB1F75_08255) ybeY 1588901..1589374 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  AB1F75_RS08260 (AB1F75_08260) unpK 1589355..1589726 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  AB1F75_RS08265 (AB1F75_08265) - 1589845..1590256 (+) 412 Protein_1619 cytidine deaminase -
  AB1F75_RS08270 (AB1F75_08270) era 1590237..1591142 (+) 906 WP_015251686.1 GTPase Era -
  AB1F75_RS08275 (AB1F75_08275) yqzL 1591290..1591433 (+) 144 WP_003230053.1 YqzL family protein -
  AB1F75_RS08280 (AB1F75_08280) recO 1591470..1592237 (+) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  AB1F75_RS08285 (AB1F75_08285) glyQ 1592534..1593421 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  AB1F75_RS08290 (AB1F75_08290) glyS 1593414..1595453 (+) 2040 WP_015251687.1 glycine--tRNA ligase subunit beta -
  AB1F75_RS08295 (AB1F75_08295) ccpN 1595586..1596224 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  AB1F75_RS08300 (AB1F75_08300) ppsR 1596250..1597062 (+) 813 WP_015251688.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=1020801 AB1F75_RS08280 WP_014477369.1 1591470..1592237(+) (recO) [Bacillus subtilis subsp. subtilis strain BSP1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1020801 AB1F75_RS08280 WP_014477369.1 1591470..1592237(+) (recO) [Bacillus subtilis subsp. subtilis strain BSP1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment