Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB1F75_RS06945 Genome accession   NZ_CP160396
Coordinates   1361650..1362396 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1356650..1367396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS06930 (AB1F75_06930) - 1356877..1357068 (-) 192 WP_003222590.1 hypothetical protein -
  AB1F75_RS06935 (AB1F75_06935) valS 1357516..1360158 (+) 2643 WP_017697542.1 valine--tRNA ligase -
  AB1F75_RS06940 (AB1F75_06940) folC 1360218..1361510 (+) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB1F75_RS06945 (AB1F75_06945) comC 1361650..1362396 (+) 747 WP_072592551.1 A24 family peptidase Machinery gene
  AB1F75_RS06950 (AB1F75_06950) spoIIB 1362530..1363528 (+) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  AB1F75_RS06955 (AB1F75_06955) maf 1363681..1364250 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  AB1F75_RS06960 (AB1F75_06960) radC 1364287..1364982 (+) 696 WP_015251546.1 DNA repair protein RadC -
  AB1F75_RS06965 (AB1F75_06965) mreB 1365074..1366087 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AB1F75_RS06970 (AB1F75_06970) mreC 1366118..1366990 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=1020793 AB1F75_RS06945 WP_072592551.1 1361650..1362396(+) (comC) [Bacillus subtilis subsp. subtilis strain BSP1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1020793 AB1F75_RS06945 WP_072592551.1 1361650..1362396(+) (comC) [Bacillus subtilis subsp. subtilis strain BSP1]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment