Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABUE11_RS16745 Genome accession   NZ_CP160388
Coordinates   3544300..3545832 (-) Length   510 a.a.
NCBI ID   WP_367066532.1    Uniprot ID   -
Organism   Oryzisolibacter sp. LB2S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539300..3550832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE11_RS16720 - 3539845..3540672 (-) 828 WP_367066526.1 UPF0149 family protein -
  ABUE11_RS16725 - 3541123..3541605 (-) 483 WP_367066527.1 putative toxin-antitoxin system toxin component, PIN family -
  ABUE11_RS16730 - 3541595..3542872 (-) 1278 WP_367066528.1 THUMP domain-containing protein -
  ABUE11_RS16735 - 3543086..3543769 (+) 684 WP_367066529.1 PEP-CTERM sorting domain-containing protein -
  ABUE11_RS16740 - 3543848..3544285 (-) 438 WP_367066530.1 thioesterase family protein -
  ABUE11_RS16745 rpoN/rpoN1 3544300..3545832 (-) 1533 WP_367066532.1 RNA polymerase factor sigma-54 Machinery gene
  ABUE11_RS16750 lptB 3545879..3546661 (-) 783 WP_367066533.1 LPS export ABC transporter ATP-binding protein -
  ABUE11_RS16755 lptA 3546670..3547305 (-) 636 WP_367066534.1 lipopolysaccharide transport periplasmic protein LptA -
  ABUE11_RS16760 - 3547425..3548057 (-) 633 WP_367066535.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABUE11_RS16765 - 3548117..3548773 (-) 657 WP_367066536.1 SPOR domain-containing protein -
  ABUE11_RS16770 argS 3548782..3550461 (-) 1680 WP_367066537.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 56002.84 Da        Isoelectric Point: 4.5449

>NTDB_id=1020767 ABUE11_RS16745 WP_367066532.1 3544300..3545832(-) (rpoN/rpoN1) [Oryzisolibacter sp. LB2S]
MKPNLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDENPFLELSSDDGAPEPDPQAPADATYSEATNADQISAG
DENDVETPAVDTPDDWEGDGSMDAAVEDGEWGGDGTVRSGSGADEDEADAADLARSHESLTDYLHRQALSLRLSELDRAA
LRFLIESLNDDGYLEDTLESLAVGLAGADDAEQLDELVHRFTVALGLLQSLEPTGVGARDLAECLTLQLHAMNLHEEGDP
AVVEAALRICRQPLDLLAKRDLRRLSQLCATGEEDTRQAMALIARLEPRPGRRFADVERNAIVPDVIVRKTGRGAQQSFS
VQLNPDVMPRLRVHDIYASALRGGRGGEGHQALQARLQEARWFIKNIQQRFDTILRVSRAIVERQKNFFVHGELAMRPMV
LREIADELGLHESTISRVTTAKYMATPQGTFELKYFFGSGLGTETGGNASSTAVRALIKQFVAAEDARKPLSDNQIAEML
KEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1020767 ABUE11_RS16745 WP_367066532.1 3544300..3545832(-) (rpoN/rpoN1) [Oryzisolibacter sp. LB2S]
ATGAAACCGAATCTGTCGCTGCGTGTCTCGCAGCATCTGGCGCTCACGCCGCAGCTGCAGCAGTCCATTCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGCCCAGGAGGTCGAGCAGATGCTGGACGAGAACCCGTTTCTCGAGCTCTCGTCCGACGACG
GGGCGCCCGAGCCCGACCCTCAGGCCCCTGCTGATGCTACATATTCAGAAGCTACCAACGCTGACCAGATAAGCGCTGGA
GACGAAAATGACGTGGAAACTCCGGCCGTCGATACGCCCGACGACTGGGAGGGCGACGGCAGCATGGACGCGGCCGTCGA
AGACGGCGAATGGGGCGGCGATGGCACGGTGCGCAGCGGCTCCGGCGCCGATGAGGACGAGGCCGACGCCGCCGACCTGG
CGCGCAGCCACGAGTCGCTGACCGACTACCTGCACCGCCAGGCCCTGTCGCTGCGCCTGTCCGAGCTCGACCGCGCTGCG
CTGCGCTTTCTCATCGAATCGCTGAACGACGACGGCTACCTGGAAGACACGCTGGAGTCGCTGGCCGTGGGCCTGGCCGG
AGCCGACGATGCCGAGCAGCTCGACGAGCTGGTGCACCGCTTCACCGTCGCCCTGGGTCTGCTGCAAAGCCTGGAGCCCA
CCGGCGTGGGCGCGCGCGATCTCGCCGAATGCCTGACGCTGCAGCTGCACGCCATGAACCTCCACGAGGAGGGCGACCCG
GCCGTGGTGGAGGCGGCGCTGCGCATCTGCCGCCAGCCGCTGGACCTGCTGGCCAAGCGCGACCTGCGCCGCCTCAGTCA
GCTGTGCGCGACCGGCGAGGAGGACACGCGCCAGGCCATGGCGCTGATCGCGCGGCTGGAGCCGCGCCCGGGCCGGCGCT
TTGCCGACGTGGAGCGCAATGCCATCGTGCCCGACGTGATCGTCCGAAAGACCGGACGCGGCGCGCAGCAGAGCTTCAGC
GTGCAGCTCAATCCCGACGTCATGCCGCGGCTGCGCGTGCACGACATCTATGCCAGTGCCCTGCGCGGTGGTCGGGGCGG
TGAGGGCCATCAGGCGCTGCAGGCGCGACTGCAGGAGGCGCGCTGGTTCATCAAGAACATTCAGCAGCGCTTTGACACCA
TATTGCGCGTCTCGCGCGCCATCGTGGAGCGGCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGATGGTG
CTGCGCGAGATCGCAGACGAGCTCGGCCTGCACGAATCGACCATCTCGCGCGTGACCACGGCCAAGTACATGGCCACGCC
CCAGGGCACGTTCGAGCTCAAGTATTTCTTCGGCTCGGGTCTGGGAACGGAGACCGGCGGCAACGCATCGAGCACGGCGG
TGCGTGCACTCATCAAGCAGTTCGTCGCGGCGGAGGACGCGCGCAAGCCGCTGTCGGACAACCAGATCGCCGAGATGCTC
AAGGAGCAGGGCATCGAGTGCGCACGCCGCACCGTGGCCAAGTACCGCGAGGCGCTCAAGATCGCGCCGGCCAATCTGCG
CAAGGCGCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(352-508)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(132-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.453

100

0.545

Multiple sequence alignment