Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABUE11_RS01120 Genome accession   NZ_CP160388
Coordinates   245446..246828 (+) Length   460 a.a.
NCBI ID   WP_367067153.1    Uniprot ID   -
Organism   Oryzisolibacter sp. LB2S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 240446..251828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE11_RS01100 lplT 240900..242177 (-) 1278 WP_367067149.1 lysophospholipid transporter LplT -
  ABUE11_RS01105 alr 242321..243418 (+) 1098 WP_367067150.1 alanine racemase -
  ABUE11_RS01110 - 243574..244596 (+) 1023 WP_367067151.1 cytochrome-c peroxidase -
  ABUE11_RS01115 - 244690..245304 (-) 615 WP_367067152.1 glutathione S-transferase family protein -
  ABUE11_RS01120 radA 245446..246828 (+) 1383 WP_367067153.1 DNA repair protein RadA Machinery gene
  ABUE11_RS01125 - 246905..247333 (+) 429 WP_367067154.1 glycerate kinase -
  ABUE11_RS01130 - 247377..248315 (+) 939 WP_367067155.1 branched-chain amino acid transaminase -
  ABUE11_RS01135 - 248318..248524 (+) 207 WP_367067156.1 zinc-finger domain-containing protein -
  ABUE11_RS01140 - 248593..249690 (+) 1098 WP_367068715.1 glycosyltransferase -
  ABUE11_RS01145 - 249687..250937 (+) 1251 WP_367067157.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47894.34 Da        Isoelectric Point: 7.1116

>NTDB_id=1020749 ABUE11_RS01120 WP_367067153.1 245446..246828(+) (radA) [Oryzisolibacter sp. LB2S]
MAKDKTLFTCTECGGSSPRWLGKCPSCGAWNTLIETVAEAAPGKNRLSGAGQYAGLAQAQAVMPLAAIEATEVARTASGI
EELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALQRTGLPTLYVTGEESGAQVALRSRRLGLDASQVNVLAEIQLE
KILATVEATQPAVCVIDSIQTIYSDQLTSAPGSVAQVRECAAHLTRLAKATGIAVVLVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPLLVEIQALVDG
GGPSPRRLSVGLERDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLAITSSLRGRALPRGFIAFGEVG
LAGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIAGLTIHTVERVEEAMEAVRGLA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1020749 ABUE11_RS01120 WP_367067153.1 245446..246828(+) (radA) [Oryzisolibacter sp. LB2S]
ATGGCCAAGGACAAAACCCTCTTCACCTGTACCGAATGCGGCGGCAGCAGCCCGCGCTGGCTCGGCAAATGCCCGTCCTG
CGGCGCCTGGAACACGCTCATCGAGACCGTGGCCGAGGCGGCCCCCGGCAAGAACCGGCTGAGCGGCGCCGGCCAGTACG
CGGGCCTGGCCCAGGCGCAGGCGGTGATGCCGCTCGCGGCCATCGAGGCCACCGAGGTTGCGCGCACGGCCAGCGGCATT
GAGGAGCTCGACCGCGTGCTCGGCGGCGGCGTGGTCGAGGGCGGCGTGGTGCTGATAGGCGGCGATCCGGGCATTGGCAA
GTCCACGCTGCTCCTGCAGGCCATGGACGCGCTGCAGCGCACAGGCCTGCCCACGCTCTACGTGACGGGCGAGGAAAGCG
GCGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGACGCGAGCCAGGTCAACGTGCTCGCCGAGATCCAGCTCGAG
AAAATCCTCGCCACGGTCGAGGCCACCCAACCTGCGGTGTGCGTGATCGACTCCATACAGACCATCTACTCCGACCAGCT
CACGAGCGCGCCGGGCTCGGTGGCCCAGGTGCGCGAGTGCGCGGCGCACCTCACGCGCCTGGCCAAGGCCACGGGCATCG
CCGTGGTGCTTGTCGGCCATGTGACCAAGGAGGGGGCGCTGGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACGGTG
CTGTACTTCGAGGGCGACACGCATTCGAGCTTTCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCGGTCAACGAGAT
CGGCGTGTTCGCGATGACGGAGAGGGGCCTCAAGGGCGTGGCCAACCCGAGCGCCATTTTTCTCTCTCAGCACAGCGAGC
CCGTGCCGGGCAGCTGCGTGCTCGTCACGCTCGAGGGCACGCGCCCGCTGCTCGTCGAGATTCAGGCCCTGGTCGATGGC
GGCGGGCCGAGCCCCCGGCGCCTGTCCGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGTTGGCGGTCTTGCACCGCCA
CGCGGGCGTGGCCTGCGCGGACCAGGACGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCGGCCGACC
TGGCGGTGATGCTGGCCATTACCAGCAGCCTGCGCGGCCGCGCCCTGCCCAGGGGCTTCATCGCCTTTGGCGAGGTCGGC
CTGGCCGGCGAGGTGCGCCCCGCGCCACGCGGCCAGGAGCGGCTCAAGGAGGCCGCCAAGCTCGGCTTCAGCGTGGCCGT
GGTGCCCAAGGCGAACGCGCCCAAGAAGCCCATTGCCGGCCTCACCATCCACACCGTGGAGCGCGTCGAGGAGGCCATGG
AGGCCGTGCGCGGTCTGGCGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

47.265

99.348

0.47
  radA Streptococcus mitis SK321

47.265

99.348

0.47
  radA Streptococcus pneumoniae Rx1

47.875

97.174

0.465
  radA Streptococcus pneumoniae D39

47.875

97.174

0.465
  radA Streptococcus pneumoniae R6

47.875

97.174

0.465
  radA Streptococcus pneumoniae TIGR4

47.875

97.174

0.465

Multiple sequence alignment