Detailed information NTG1020734

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABU603_RS05565
• Genome accession: NZ_CP160387
• Coordinates: 1200907..1202181 (-)
• Length: 424 a.a.
• NCBI ID: WP_370469805.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer09
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1195907..1207181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU603_RS05555 (ABU603_15220)	-	1197571..1199250 (+)	1680	WP_370469804.1	McrB family protein	-
ABU603_RS05560 (ABU603_06305)	-	1199256..1200383 (+)	1128	WP_367442251.1	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	-
ABU603_RS05565 (ABU603_06300)	pilA	1200907..1202181 (-)	1275	WP_370469805.1	signal recognition particle-docking protein FtsY	Machinery gene
ABU603_RS05570 (ABU603_15225)	-	1202589..1203137 (-)	549	WP_370388440.1	5'-3'-deoxyribonucleotidase	-
ABU603_RS05575 (ABU603_06280)	ruvA	1203179..1203757 (-)	579	WP_100151497.1	Holliday junction branch migration protein RuvA	-
ABU603_RS05580 (ABU603_06275)	-	1203836..1204549 (-)	714	WP_370469806.1	septal ring lytic transglycosylase RlpA family protein	-
ABU603_RS05585 (ABU603_06270)	-	1204910..1205620 (-)	711	WP_370469807.1	ComF family protein	-
ABU603_RS05590 (ABU603_06265)	bioH	1205619..1206371 (+)	753	WP_367442243.1	pimeloyl-ACP methyl ester esterase BioH	-
ABU603_RS05595 (ABU603_06260)	-	1206368..1207177 (+)	810	WP_367420726.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 45332.39 Da
• Isoelectric Point: 4.5714

>NTDB_id=1020734 ABU603_RS05565 WP_370469805.1 1200907..1202181(-) (pilA) [Snodgrassella alvi strain Acer09]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEEHTANAAVSESTATETTEDIIVPAAVDEP
AAIATSTESEIIQAPASENTIVIPVETTETPGEIDKPARLGWAARLKQGLSKSRSQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPADKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GEGIDDLRPFDAKAFVDALIEDEE

Nucleotide

• Length: 1275 bp

>NTDB_id=1020734 ABU603_RS05565 WP_370469805.1 1200907..1202181(-) (pilA) [Snodgrassella alvi strain Acer09]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCGCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACTCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAGAGCACA
CAGCGAATGCAGCCGTCTCCGAATCTACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCTGCTGTAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAGATTATTCAGGCTCCGGCCAGCGAAAACACCATAGTGATTCCAGTAGAAAC
CACAGAAACCCCTGGCGAAATAGACAAACCAGCTCGGCTGGGCTGGGCAGCACGGCTCAAACAGGGTCTAAGCAAATCGC
GCAGCCAGATGGCCAAATCGCTGGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTACGAAGAGCTGGAAACT
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGACAGCGCGTTACTTTGAAAGG
ATTGAAAAACGGAAACGAACTGCGCAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCCTTGT
CCATACCTGCTGATAAAAAACCTTTTGTTATCATGATGGCTGGCGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTCTTGGCCGCAGGCGACACTTTCCGTGCAGCTGCCCGCGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCCGCTGTCTGCTTCGATG
CCCTTGAAGCCGCCAAAGCACGCGGTATTGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAACGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCCTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCAGTACGCTTCATCGGTGTA
GGCGAAGGCATAGACGATTTACGTCCGTTTGACGCTAAAGCATTTGTAGATGCATTGATTGAGGATGAGGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (221-420)

• SRP54-type protein, helical bundle domain (SRP54_N) (137-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.941	100	0.651