Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB1F71_RS04320 Genome accession   NZ_CP160386
Coordinates   875494..877248 (+) Length   584 a.a.
NCBI ID   WP_002263294.1    Uniprot ID   A0AAX1K4F0
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 854430..877248 875494..877248 within 0


Gene organization within MGE regions


Location: 854430..877248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS04245 (AB1F71_04245) - 854430..855635 (+) 1206 WP_002262894.1 CCA tRNA nucleotidyltransferase -
  AB1F71_RS04250 (AB1F71_04250) - 855638..857506 (+) 1869 WP_002262895.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB1F71_RS04255 (AB1F71_04255) - 857963..859699 (+) 1737 WP_002262897.1 ABC transporter ATP-binding protein -
  AB1F71_RS04260 (AB1F71_04260) - 859710..861482 (+) 1773 WP_002262898.1 ABC transporter ATP-binding protein -
  AB1F71_RS04265 (AB1F71_04265) - 861598..862518 (+) 921 WP_002262899.1 AEC family transporter -
  AB1F71_RS04270 (AB1F71_04270) gtfD 862738..867126 (+) 4389 WP_002352262.1 glucosyltransferase-S -
  AB1F71_RS04275 (AB1F71_04275) - 867301..867810 (-) 510 WP_002262901.1 DUF308 domain-containing protein -
  AB1F71_RS04280 (AB1F71_04280) gdhA 868446..869795 (+) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -
  AB1F71_RS04285 (AB1F71_04285) - 869907..870290 (-) 384 WP_002263287.1 DUF3021 family protein -
  AB1F71_RS04290 (AB1F71_04290) queF 870399..870887 (-) 489 WP_002263288.1 preQ(1) synthase -
  AB1F71_RS04295 (AB1F71_04295) queE 870900..871616 (-) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  AB1F71_RS04300 (AB1F71_04300) queD 871613..872059 (-) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  AB1F71_RS04305 (AB1F71_04305) queC 872059..872712 (-) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  AB1F71_RS04310 (AB1F71_04310) rcrR 873264..873698 (+) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  AB1F71_RS04315 (AB1F71_04315) rcrP 873702..875504 (+) 1803 WP_002263293.1 ATP-binding cassette domain-containing protein Regulator
  AB1F71_RS04320 (AB1F71_04320) rcrQ 875494..877248 (+) 1755 WP_002263294.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64590.66 Da        Isoelectric Point: 6.0636

>NTDB_id=1020673 AB1F71_RS04320 WP_002263294.1 875494..877248(+) (rcrQ) [Streptococcus mutans strain UA159 ykuR deletion]
MENKKKSLLSQMAPYLKGYKALFGLAVIFTIVSSTITVIGPDRLKEMTDTMTKGLAGKIDLDKIGEIALTLALLYFAGAL
VSYTASFIVSTLIQKFSQRLRNAIADKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAIILLIGSIFMM
IKTNGALAATAILSVFAGFVLSTVIMAKSQPLFKKQQANLADVSGYVEEVYSGHNVVSSYNAIQQSKKQFENLNDQLFAS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGATMAINGDITMGTIVAFMTYVRIFTQPIAQIAQGITQLQSANAAMGRVFE
FLDEEEIEDENHKVKQLEKVEGNVNFDNVFFGYSPDKTIIHDFSAHAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVDRGM
ISIDGVNIHDMTRKEVHDAFAMVLQDTWLFEGTVKENLIYNQKHITDEQVIAAAKAVGVHHFIKTLPKGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQRAMDHLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMAENGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=1020673 AB1F71_RS04320 WP_002263294.1 875494..877248(+) (rcrQ) [Streptococcus mutans strain UA159 ykuR deletion]
ATGGAAAATAAGAAGAAATCATTATTAAGCCAAATGGCTCCTTACCTTAAAGGCTATAAGGCTTTATTTGGACTTGCTGT
CATTTTTACTATCGTTTCAAGTACGATTACTGTTATTGGACCTGACCGGCTGAAAGAGATGACAGATACCATGACCAAAG
GGCTGGCAGGAAAAATTGATTTAGATAAAATCGGTGAGATTGCTCTAACCTTGGCTCTCTTATACTTTGCTGGTGCTTTG
GTTTCTTATACTGCTAGCTTTATTGTGTCCACTTTGATTCAAAAGTTTTCGCAACGTCTGCGCAATGCCATTGCAGATAA
AATCAATAAGGTACCGCTCAAATATTTTGACAGCCATTCACAAGGAGATACCTTGTCTCGAGTGACCAATGATGTGGATT
TAATGACACAGTCTTTCAACCAAAGTTTAGTTTCAATGGTAGCAGCTATAATTCTCCTGATTGGCTCTATTTTCATGATG
ATTAAAACCAATGGAGCTCTTGCAGCGACCGCTATTTTGTCTGTTTTTGCTGGTTTTGTGTTATCCACTGTTATCATGGC
CAAGAGCCAGCCGCTTTTTAAAAAGCAACAAGCTAATCTAGCCGATGTCAGCGGTTATGTTGAAGAGGTCTATTCAGGTC
ATAATGTGGTTTCTAGTTACAATGCGATTCAGCAAAGCAAGAAGCAGTTTGAAAACTTGAATGACCAATTATTTGCAAGT
ATGTGGAAATCACAATTCTTTTCTGGAATTATGATGCCCCTTATGCAATTCATCGGAAATTTTGGGTATGTCATGGTCTG
TATTGTCGGTGCTACCATGGCTATTAACGGCGATATTACTATGGGAACGATTGTTGCCTTTATGACTTACGTCCGTATTT
TTACTCAGCCCATTGCGCAGATTGCTCAAGGAATCACTCAATTGCAATCAGCTAATGCTGCTATGGGACGTGTCTTTGAA
TTTCTTGATGAGGAAGAAATAGAAGACGAAAACCATAAAGTTAAACAACTTGAAAAAGTTGAAGGAAATGTTAATTTTGA
CAATGTTTTCTTTGGTTATAGTCCTGATAAAACTATTATTCATGATTTCTCGGCTCATGCTAAGGCTGGTCAAAAAATTG
CTATTGTGGGACCGACTGGTGCGGGTAAGACAACGATTGTTAACTTACTTATGCGTTTCTATGAGGTTGATAGAGGGATG
ATTTCTATTGATGGAGTTAATATCCATGATATGACACGAAAAGAAGTGCATGATGCTTTTGCCATGGTACTCCAAGATAC
TTGGCTCTTTGAAGGTACAGTTAAGGAAAATCTGATTTATAATCAAAAACATATCACTGATGAGCAAGTGATTGCAGCAG
CTAAGGCAGTTGGTGTTCATCATTTCATCAAGACTTTACCTAAGGGTTATGATACTGTTTTAGATGATTCGGTCACCTTA
TCAGTCGGTCAAAAACAACTCTTGACCATTGCACGTGCTCTTCTTAAAGATGCACCGCTTCTGATTCTTGATGAAGCAAC
TTCCTCTGTTGATACTCGTACGGAAGAACTTATTCAAAGGGCTATGGATCATTTGATGGAGGGGCGGACATCATTCGTTA
TTGCCCATCGTCTGTCAACTATTCGCAATGCTGATCTTATTCTTGTCATGAGAGATGGTAATATTATTGAACAAGGCAGC
CATGACCAATTGATGGCAGAAAATGGCTTCTATGCCGATCTCTATAATAGTCAATTTACAGAAGAAGTGGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

100

100

1

Multiple sequence alignment