Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB1F71_RS01625 Genome accession   NZ_CP160386
Coordinates   307079..308479 (+) Length   466 a.a.
NCBI ID   WP_002262520.1    Uniprot ID   Q8DVY2
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 302079..313479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS01595 (AB1F71_01595) - 302717..303253 (+) 537 WP_002268013.1 5-formyltetrahydrofolate cyclo-ligase -
  AB1F71_RS01600 (AB1F71_01600) - 303240..303911 (+) 672 WP_002262525.1 rhomboid family intramembrane serine protease -
  AB1F71_RS01605 (AB1F71_01605) galU 303933..304853 (-) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AB1F71_RS01610 (AB1F71_01610) - 304855..305874 (-) 1020 WP_002262523.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AB1F71_RS01615 (AB1F71_01615) - 306198..306641 (+) 444 WP_002262522.1 dUTP diphosphatase -
  AB1F71_RS01620 (AB1F71_01620) - 306651..307121 (+) 471 WP_002262521.1 cysteine hydrolase family protein -
  AB1F71_RS01625 (AB1F71_01625) radA 307079..308479 (+) 1401 WP_002262520.1 DNA repair protein RadA Machinery gene
  AB1F71_RS01630 (AB1F71_01630) - 308569..309063 (+) 495 WP_002262519.1 carbonic anhydrase -
  AB1F71_RS01635 (AB1F71_01635) - 309252..309965 (+) 714 WP_002262518.1 TIGR00266 family protein -
  AB1F71_RS01640 (AB1F71_01640) gltX 310252..311709 (+) 1458 WP_002262517.1 glutamate--tRNA ligase -
  AB1F71_RS01645 (AB1F71_01645) - 311825..312349 (+) 525 WP_002262516.1 transcription repressor NadR -
  AB1F71_RS01650 (AB1F71_01650) - 312416..312964 (+) 549 WP_002262515.1 hypothetical protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51108.64 Da        Isoelectric Point: 7.1359

>NTDB_id=1020656 AB1F71_RS01625 WP_002262520.1 307079..308479(+) (radA) [Streptococcus mutans strain UA159 ykuR deletion]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTTPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1020656 AB1F71_RS01625 WP_002262520.1 307079..308479(+) (radA) [Streptococcus mutans strain UA159 ykuR deletion]
ATGGCAGATTGCTGGAATAGTAACGAGAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGGTTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGTGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGTGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCACCCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.159

96.996

0.865
  radA Streptococcus pneumoniae D39

89.159

96.996

0.865
  radA Streptococcus pneumoniae R6

89.159

96.996

0.865
  radA Streptococcus pneumoniae TIGR4

89.159

96.996

0.865
  radA Streptococcus mitis SK321

89.159

96.996

0.865
  radA Streptococcus mitis NCTC 12261

88.938

96.996

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

61.81

97.21

0.601

Multiple sequence alignment