Detailed information NTG1020555

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QRP18_RS12875
• Genome accession: NZ_CP160382
• Coordinates: 2792243..2793232 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain ST110-8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2787243..2798232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRP18_RS12860 (QRP18_12860)	recA	2787782..2788825 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
QRP18_RS12865 (QRP18_12865)	pncC	2789026..2789508 (-)	483	WP_005455551.1	nicotinamide-nucleotide amidase	-
QRP18_RS12870 (QRP18_12870)	mutS	2789593..2792154 (+)	2562	WP_110177550.1	DNA mismatch repair protein MutS	-
QRP18_RS12875 (QRP18_12875)	rpoS	2792243..2793232 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
QRP18_RS12880 (QRP18_12880)	-	2793313..2794236 (-)	924	WP_069540980.1	peptidoglycan DD-metalloendopeptidase family protein	-
QRP18_RS12885 (QRP18_12885)	-	2794251..2794877 (-)	627	WP_110177549.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QRP18_RS12890 (QRP18_12890)	surE	2794877..2795653 (-)	777	WP_029804971.1	5'/3'-nucleotidase SurE	-
QRP18_RS12895 (QRP18_12895)	truD	2795653..2796696 (-)	1044	WP_029804969.1	tRNA pseudouridine(13) synthase TruD	-
QRP18_RS12900 (QRP18_12900)	ispF	2796743..2797219 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QRP18_RS12905 (QRP18_12905)	ispD	2797237..2797941 (-)	705	WP_025507453.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QRP18_RS12910 (QRP18_12910)	ftsB	2797943..2798224 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=1020555 QRP18_RS12875 WP_005478537.1 2792243..2793232(-) (rpoS) [Vibrio parahaemolyticus strain ST110-8]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=1020555 QRP18_RS12875 WP_005478537.1 2792243..2793232(-) (rpoS) [Vibrio parahaemolyticus strain ST110-8]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACA
ATCCGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCA
TGAACCAACAGCGGAAGAGATCGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTACGCCTCAACGAGC
GTATCAGTTCTGTTGACACGCCAATCGGTGGTGACGGCGAGAAAGCGCTACTGGATATCATTCCTGATGCGAACAACTCG
GATCCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAA
AGAAGTGCTGGCACGTCGTTTTGGTCTGCTTGGTTACGAGCCATCAACGCTTGAAGAGGTGGGACGTGAAATTGGTCTAA
CACGCGAACGCGTTCGTCAGATCCAAGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTAAACATG
GAAAACCTGTTTAACGTGGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851