Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QRP18_RS06740 Genome accession   NZ_CP160382
Coordinates   1458194..1459615 (-) Length   473 a.a.
NCBI ID   WP_021449193.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain ST110-8     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1453194..1464615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRP18_RS06715 (QRP18_06715) - 1453758..1454408 (+) 651 WP_005480776.1 thiopurine S-methyltransferase -
  QRP18_RS06720 (QRP18_06720) purT 1454510..1455685 (-) 1176 WP_110176789.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  QRP18_RS06725 (QRP18_06725) cdd 1455833..1456720 (-) 888 WP_020840481.1 cytidine deaminase -
  QRP18_RS06730 (QRP18_06730) - 1457085..1457762 (-) 678 WP_005454891.1 LrgB family protein -
  QRP18_RS06735 (QRP18_06735) - 1457764..1458138 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  QRP18_RS06740 (QRP18_06740) sbcB 1458194..1459615 (-) 1422 WP_021449193.1 exodeoxyribonuclease I Machinery gene
  QRP18_RS06745 (QRP18_06745) - 1459771..1461144 (-) 1374 WP_025556039.1 L-cystine transporter -
  QRP18_RS06750 (QRP18_06750) - 1461337..1462032 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  QRP18_RS06755 (QRP18_06755) cobT 1462716..1463759 (+) 1044 WP_021453099.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  QRP18_RS06760 (QRP18_06760) - 1463804..1464556 (+) 753 WP_031792000.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54645.97 Da        Isoelectric Point: 4.9813

>NTDB_id=1020543 QRP18_RS06740 WP_021449193.1 1458194..1459615(-) (sbcB) [Vibrio parahaemolyticus strain ST110-8]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1020543 QRP18_RS06740 WP_021449193.1 1458194..1459615(-) (sbcB) [Vibrio parahaemolyticus strain ST110-8]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAGCCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCAGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGTATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAGCTGTTTGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTAGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTTAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment