Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   DQM41_RS03165 Genome accession   NZ_LS483362
Coordinates   597406..597789 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni strain NCTC11168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592406..602789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM41_RS03145 (NCTC11168_00632) - 592485..594419 (-) 1935 WP_010891871.1 ribonuclease R family protein -
  DQM41_RS03150 (NCTC11168_00633) ilvC 594538..595560 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  DQM41_RS03155 (NCTC11168_00634) - 595564..596646 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  DQM41_RS03160 (NCTC11168_00635) dprA 596636..597409 (+) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  DQM41_RS03165 (NCTC11168_00636) dprB 597406..597789 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  DQM41_RS03170 (NCTC11168_00637) - 597818..598657 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  DQM41_RS03175 (NCTC11168_00638) msrA 598833..599330 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  DQM41_RS03180 (NCTC11168_00639) ppa 599371..599889 (-) 519 WP_002858521.1 inorganic diphosphatase -
  DQM41_RS03185 (NCTC11168_00640) adk 599899..600477 (-) 579 WP_002858481.1 adenylate kinase -
  DQM41_RS03190 (NCTC11168_00641) aspS 600474..602225 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=1020481 DQM41_RS03165 WP_002852281.1 597406..597789(+) (dprB) [Campylobacter jejuni subsp. jejuni strain NCTC11168]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1020481 DQM41_RS03165 WP_002852281.1 597406..597789(+) (dprB) [Campylobacter jejuni subsp. jejuni strain NCTC11168]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449