Detailed information NTG1020478

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABU188_RS10090
• Genome accession: NZ_CP160327
• Coordinates: 2210293..2211567 (-)
• Length: 424 a.a.
• NCBI ID: WP_370469805.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2205293..2216567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU188_RS10080 (ABU188_16015)	-	2206957..2208636 (+)	1680	WP_370469804.1	McrB family protein	-
ABU188_RS10085 (ABU188_10555)	-	2208642..2209769 (+)	1128	WP_367442251.1	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	-
ABU188_RS10090 (ABU188_10560)	pilA	2210293..2211567 (-)	1275	WP_370469805.1	signal recognition particle-docking protein FtsY	Machinery gene
ABU188_RS10095 (ABU188_16020)	-	2211975..2212523 (-)	549	WP_370388440.1	5'-3'-deoxyribonucleotidase	-
ABU188_RS10100 (ABU188_10580)	ruvA	2212565..2213143 (-)	579	WP_100151497.1	Holliday junction branch migration protein RuvA	-
ABU188_RS10105 (ABU188_16025)	-	2213222..2213935 (-)	714	WP_370469806.1	septal ring lytic transglycosylase RlpA family protein	-
ABU188_RS10110 (ABU188_16030)	-	2214296..2215006 (-)	711	WP_370469807.1	ComF family protein	-
ABU188_RS10115 (ABU188_10605)	bioH	2215005..2215757 (+)	753	WP_367442243.1	pimeloyl-ACP methyl ester esterase BioH	-
ABU188_RS10120 (ABU188_10610)	-	2215754..2216563 (+)	810	WP_367420726.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 45332.39 Da
• Isoelectric Point: 4.5714

>NTDB_id=1020478 ABU188_RS10090 WP_370469805.1 2210293..2211567(-) (pilA) [Snodgrassella alvi strain Acer10]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEEHTANAAVSESTATETTEDIIVPAAVDEP
AAIATSTESEIIQAPASENTIVIPVETTETPGEIDKPARLGWAARLKQGLSKSRSQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPADKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GEGIDDLRPFDAKAFVDALIEDEE

Nucleotide

• Length: 1275 bp

>NTDB_id=1020478 ABU188_RS10090 WP_370469805.1 2210293..2211567(-) (pilA) [Snodgrassella alvi strain Acer10]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCGCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACTCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAGAGCACA
CAGCGAATGCAGCCGTCTCCGAATCTACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCTGCTGTAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAGATTATTCAGGCTCCGGCCAGCGAAAACACCATAGTGATTCCAGTAGAAAC
CACAGAAACCCCTGGCGAAATAGACAAACCAGCTCGGCTGGGCTGGGCAGCACGGCTCAAACAGGGTCTAAGCAAATCGC
GCAGCCAGATGGCCAAATCGCTGGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTACGAAGAGCTGGAAACT
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGACAGCGCGTTACTTTGAAAGG
ATTGAAAAACGGAAACGAACTGCGCAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCCTTGT
CCATACCTGCTGATAAAAAACCTTTTGTTATCATGATGGCTGGCGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTCTTGGCCGCAGGCGACACTTTCCGTGCAGCTGCCCGCGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCCGCTGTCTGCTTCGATG
CCCTTGAAGCCGCCAAAGCACGCGGTATTGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAACGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCCTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCAGTACGCTTCATCGGTGTA
GGCGAAGGCATAGACGATTTACGTCCGTTTGACGCTAAAGCATTTGTAGATGCATTGATTGAGGATGAGGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (221-420)

• SRP54-type protein, helical bundle domain (SRP54_N) (137-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.941	100	0.651