Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABUW22_RS06315 Genome accession   NZ_CP160326
Coordinates   1406898..1407371 (-) Length   157 a.a.
NCBI ID   WP_100139939.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer01     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401898..1412371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUW22_RS06295 (ABUW22_12055) lpdA 1402250..1404004 (+) 1755 WP_370387208.1 dihydrolipoyl dehydrogenase -
  ABUW22_RS06300 (ABUW22_12060) - 1404263..1405381 (+) 1119 WP_370387844.1 AI-2E family transporter -
  ABUW22_RS06305 (ABUW22_12065) rpsT 1405511..1405777 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABUW22_RS06310 (ABUW22_12070) - 1405810..1406763 (+) 954 WP_267390074.1 bile acid:sodium symporter family protein -
  ABUW22_RS06315 (ABUW22_12075) recX 1406898..1407371 (-) 474 WP_100139939.1 recombination regulator RecX Regulator
  ABUW22_RS06320 (ABUW22_12080) - 1407368..1408075 (-) 708 WP_370387209.1 phosphoglycolate phosphatase -
  ABUW22_RS06325 (ABUW22_12090) - 1408228..1409298 (-) 1071 WP_367430785.1 aldose epimerase family protein -
  ABUW22_RS06330 (ABUW22_12095) - 1409285..1410598 (-) 1314 WP_367418209.1 replication-associated recombination protein A -
  ABUW22_RS06335 (ABUW22_12100) - 1410763..1411110 (+) 348 WP_370387210.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 18483.13 Da        Isoelectric Point: 9.5467

>NTDB_id=1020444 ABUW22_RS06315 WP_100139939.1 1406898..1407371(-) (recX) [Snodgrassella alvi strain Acer01]
MKPKISLRGRAIAILARQEISRAELTRKLRPHVEENDDIESLLDELAERHWQSDARYAETYINSKSRIHGNLRLQQSLKQ
KGVKAELIADYLPNKAEQISNAVAVLQKKYRRPPSDLKEKHKYMHFLAYRGFSMDIINTAMHRAWEESILPEEEFWE

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1020444 ABUW22_RS06315 WP_100139939.1 1406898..1407371(-) (recX) [Snodgrassella alvi strain Acer01]
ATGAAACCAAAAATCAGCTTACGCGGCCGTGCCATTGCTATATTGGCACGGCAAGAAATCAGCCGTGCTGAGCTGACTCG
TAAATTACGCCCGCATGTAGAAGAAAACGATGATATTGAATCTTTGCTAGATGAACTAGCCGAGCGGCACTGGCAATCTG
ATGCTCGCTATGCGGAAACCTACATCAACAGTAAAAGCCGTATACACGGCAATCTGCGATTACAGCAAAGCCTTAAACAA
AAAGGAGTTAAAGCGGAGCTGATTGCCGATTATCTGCCAAACAAAGCGGAACAAATCAGTAATGCAGTCGCTGTTTTACA
AAAAAAATATCGCCGGCCTCCATCTGATTTAAAAGAAAAGCACAAATATATGCATTTTCTAGCCTATCGTGGATTTAGCA
TGGATATTATCAATACAGCTATGCATCGTGCTTGGGAAGAGAGTATTCTTCCAGAGGAAGAGTTTTGGGAATAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(31-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.703

94.268

0.497

Multiple sequence alignment