Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DQM53_RS07310 Genome accession   NZ_LS483361
Coordinates   1453447..1454109 (-) Length   220 a.a.
NCBI ID   WP_003057999.1    Uniprot ID   A0ABU0A4Z4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1448447..1459109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS07295 (NCTC6179_01506) sodA 1449401..1450006 (-) 606 WP_111717007.1 superoxide dismutase SodA -
  DQM53_RS07300 (NCTC6179_01507) holA 1450096..1451142 (-) 1047 WP_111717009.1 DNA polymerase III subunit delta -
  DQM53_RS07305 (NCTC6179_01508) comEC/celB 1451223..1453466 (-) 2244 WP_111717011.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQM53_RS07310 (NCTC6179_01509) comEA 1453447..1454109 (-) 663 WP_003057999.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQM53_RS07315 (NCTC6179_01510) - 1454506..1455246 (-) 741 WP_164714901.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  DQM53_RS07320 (NCTC6179_01511) - 1455364..1456140 (+) 777 WP_111717937.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQM53_RS07325 (NCTC6179_01512) - 1456130..1456408 (+) 279 WP_111717016.1 GIY-YIG nuclease family protein -
  DQM53_RS07330 (NCTC6179_01513) - 1456432..1458432 (-) 2001 WP_111717018.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24080.46 Da        Isoelectric Point: 5.8872

>NTDB_id=1020428 DQM53_RS07310 WP_003057999.1 1453447..1454109(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MIDDLLTKGTNSLKKVYSLPRLIGVVLAIFLILTLSFVIWGKEQSQTKLPIVSTSSSIQQPASEEKKYSSEESNILVDLK
GAVQQEGVYKLRANSRVRDVIELAGGLTQEADRHAVNFAEKLVDEQVVYVAKQGEDISVLPNASSAGKANAEMSNSTKVN
INKANLEELQRISGIGVKRAQDILETRDSLGGFKTLDDLRQVSGIGEKTLEKLKHELSLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1020428 DQM53_RS07310 WP_003057999.1 1453447..1454109(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGATAGATGACTTGTTAACTAAAGGAACAAATAGCTTGAAAAAGGTTTATTCTCTGCCACGCTTGATTGGTGTTGTGTT
AGCGATTTTTCTGATACTAACCCTAAGTTTTGTTATCTGGGGCAAAGAGCAGAGCCAAACAAAACTTCCTATTGTATCAA
CTTCTTCTTCCATACAACAGCCAGCTAGTGAGGAAAAAAAGTATTCTTCAGAAGAGAGTAATATTTTAGTGGATTTGAAA
GGAGCCGTACAACAGGAGGGAGTTTATAAGCTCAGGGCAAATAGTCGTGTGCGCGATGTCATTGAATTAGCTGGGGGACT
TACTCAGGAAGCTGATAGACATGCTGTTAATTTTGCAGAAAAACTGGTGGATGAACAGGTTGTGTATGTGGCTAAGCAGG
GTGAAGACATTTCTGTCTTGCCAAATGCCTCCTCAGCAGGTAAAGCTAACGCAGAAATGTCTAACTCAACAAAGGTGAAT
ATCAATAAGGCAAATTTAGAGGAGTTACAACGTATTTCGGGCATTGGTGTAAAAAGGGCTCAGGATATTCTTGAGACGAG
AGACAGTCTAGGTGGCTTTAAAACGTTAGATGATCTTAGACAGGTATCTGGAATTGGTGAAAAAACACTTGAGAAATTGA
AACATGAACTATCGTTGGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-129)

Helix-hairpin-helix motif (HHH_3)

(155-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

38.389

95.909

0.368