Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB0R67_RS25860 Genome accession   NZ_CP160237
Coordinates   5040890..5042239 (-) Length   449 a.a.
NCBI ID   WP_090978133.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain JJ1216     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5035890..5047239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS25825 (AB0R67_25830) - 5036062..5036748 (-) 687 WP_366559527.1 hypothetical protein -
  AB0R67_RS25830 (AB0R67_25835) - 5036735..5037523 (-) 789 WP_000120050.1 hypothetical protein -
  AB0R67_RS25835 (AB0R67_25840) - 5037555..5038124 (-) 570 WP_001211060.1 hypothetical protein -
  AB0R67_RS25840 (AB0R67_25845) - 5038242..5038724 (-) 483 WP_000023374.1 hypothetical protein -
  AB0R67_RS25845 (AB0R67_25850) raiA 5038996..5039538 (-) 543 WP_000671193.1 ribosome-associated translation inhibitor RaiA -
  AB0R67_RS25850 (AB0R67_25855) cspC 5039862..5040059 (-) 198 WP_001990088.1 cold shock protein CspC -
  AB0R67_RS25855 (AB0R67_25860) - 5040186..5040890 (-) 705 WP_090978131.1 ComF family protein -
  AB0R67_RS25860 (AB0R67_25865) comFA 5040890..5042239 (-) 1350 WP_090978133.1 ATP-dependent helicase ComFA Machinery gene
  AB0R67_RS25865 (AB0R67_25870) - 5042367..5043794 (-) 1428 WP_000499491.1 C40 family peptidase -
  AB0R67_RS25870 (AB0R67_25875) - 5043943..5044257 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  AB0R67_RS25875 (AB0R67_25880) - 5044430..5045272 (-) 843 WP_000684727.1 DegV family protein -
  AB0R67_RS25880 (AB0R67_25885) - 5045509..5046144 (+) 636 WP_000926670.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51131.03 Da        Isoelectric Point: 10.0088

>NTDB_id=1020400 AB0R67_RS25860 WP_090978133.1 5040890..5042239(-) (comFA) [Bacillus thuringiensis strain JJ1216]
MLPGKQLLLDELSSDLQRELNDLKKKGEVVCVQGVKKKASKYVCQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECALLVRGIAERKREKNLNLLRWSGTLSTGQNLAAQGVIEAIKRKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKRKFRRGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLQTYLNKKYPIFL
FVPHVRYIEEISLLLKSLNKRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVVYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1020400 AB0R67_RS25860 WP_090978133.1 5040890..5042239(-) (comFA) [Bacillus thuringiensis strain JJ1216]
ATGCTACCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCGTGTGTGTACAAGGTGTAAAAAAGAAGGCTTCTAAATATGTATGTCAGCGTTGTGGAAATATAGAACAGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTTTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGTTACGGTGGAGCGGAACGTT
GTCTACTGGTCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCGAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGCGAACGGATGTTGTTCTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCAACCACGCATCAATTATTGCGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTATGCGGTAAAACAAGCGATG
AAAGAAAGAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAGAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCTTTGCCAGTTCCTTTGTTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACGTACTTAAATAAAAAATATCCTATTTTTTTA
TTTGTTCCCCATGTGCGATATATAGAAGAGATAAGCCTGTTGTTAAAGTCATTAAACAAGCGAATTGAAGGTGTACATGC
AGAAGATCCGGGTAGAAAAGAAAAAGTAGCGGCTTTCAGAAAAGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACAGTAAAAAATTTGCAAGTAGCGGTTTTAGGGGCGGAAGAAGAAATATTCTCAGAAAGTGCACTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCGTTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(108-254)

Helicase conserved C-terminal domain (Helicase_C)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.679

98.441

0.499
  comFA Latilactobacillus sakei subsp. sakei 23K

41.709

88.641

0.37

Multiple sequence alignment