Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AB0R67_RS19960 Genome accession   NZ_CP160237
Coordinates   3945279..3945737 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain JJ1216     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3940279..3950737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS19945 (AB0R67_19950) - 3940949..3941185 (+) 237 WP_098284575.1 hypothetical protein -
  AB0R67_RS19950 (AB0R67_19955) - 3941346..3943454 (-) 2109 WP_000421677.1 polyphosphate kinase -
  AB0R67_RS19955 (AB0R67_19960) - 3943563..3945137 (-) 1575 WP_335446614.1 Ppx/GppA family phosphatase -
  AB0R67_RS19960 (AB0R67_19965) kre 3945279..3945737 (+) 459 WP_000804864.1 YkyB family protein Regulator
  AB0R67_RS19965 (AB0R67_19970) - 3945769..3946431 (-) 663 WP_000922465.1 YkyA family protein -
  AB0R67_RS19970 (AB0R67_19975) - 3947045..3947698 (-) 654 WP_090977159.1 diguanylate cyclase -
  AB0R67_RS19975 (AB0R67_19980) - 3947862..3948095 (+) 234 WP_090977157.1 SPP1 phage holin family protein -
  AB0R67_RS19980 (AB0R67_19985) - 3948127..3948627 (-) 501 WP_000708119.1 hypothetical protein -
  AB0R67_RS19985 (AB0R67_19990) - 3949039..3950580 (+) 1542 WP_090977155.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=1020385 AB0R67_RS19960 WP_000804864.1 3945279..3945737(+) (kre) [Bacillus thuringiensis strain JJ1216]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=1020385 AB0R67_RS19960 WP_000804864.1 3945279..3945737(+) (kre) [Bacillus thuringiensis strain JJ1216]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment