Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB0R67_RS09740 Genome accession   NZ_CP160237
Coordinates   1883052..1883339 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain JJ1216     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1878052..1888339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS09720 (AB0R67_09725) - 1879227..1879424 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  AB0R67_RS09725 (AB0R67_09730) - 1879456..1879917 (+) 462 WP_000024996.1 NUDIX hydrolase -
  AB0R67_RS09730 (AB0R67_09735) nadE 1879962..1880780 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  AB0R67_RS09735 (AB0R67_09740) - 1881055..1882935 (+) 1881 WP_097924388.1 ABC transporter permease -
  AB0R67_RS09740 (AB0R67_09745) abrB 1883052..1883339 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB0R67_RS09745 (AB0R67_09750) - 1883615..1884562 (+) 948 WP_098284416.1 S8 family peptidase -
  AB0R67_RS09750 (AB0R67_09755) - 1884602..1884910 (-) 309 WP_053564708.1 helix-turn-helix transcriptional regulator -
  AB0R67_RS09755 (AB0R67_09760) - 1885017..1885952 (+) 936 WP_097821625.1 aldo/keto reductase -
  AB0R67_RS09760 (AB0R67_09765) - 1886000..1887175 (+) 1176 WP_097821626.1 MFS transporter -
  AB0R67_RS09765 (AB0R67_09770) - 1887470..1887694 (-) 225 WP_000162602.1 hypothetical protein -
  AB0R67_RS09770 (AB0R67_09775) - 1887779..1888126 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=1020378 AB0R67_RS09740 WP_000648324.1 1883052..1883339(+) (abrB) [Bacillus thuringiensis strain JJ1216]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1020378 AB0R67_RS09740 WP_000648324.1 1883052..1883339(+) (abrB) [Bacillus thuringiensis strain JJ1216]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAGATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment