Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB0R67_RS07825 Genome accession   NZ_CP160237
Coordinates   1502033..1502635 (-) Length   200 a.a.
NCBI ID   WP_335446219.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain JJ1216     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497033..1507635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS07805 (AB0R67_07810) dnaD 1497349..1498056 (+) 708 WP_000728542.1 DNA replication protein DnaD -
  AB0R67_RS07810 (AB0R67_07815) nth 1498072..1498719 (+) 648 WP_000933035.1 endonuclease III -
  AB0R67_RS07815 (AB0R67_07820) - 1498723..1499241 (+) 519 WP_075716819.1 YpoC family protein -
  AB0R67_RS07820 (AB0R67_07825) - 1499267..1501966 (-) 2700 WP_088021955.1 PBP1A family penicillin-binding protein -
  AB0R67_RS07825 (AB0R67_07830) recU 1502033..1502635 (-) 603 WP_335446219.1 Holliday junction resolvase RecU Machinery gene
  AB0R67_RS07830 (AB0R67_07835) - 1502739..1503764 (+) 1026 WP_065228537.1 DUF2515 domain-containing protein -
  AB0R67_RS07835 (AB0R67_07840) - 1503916..1504095 (-) 180 WP_001987054.1 hypothetical protein -
  AB0R67_RS07840 (AB0R67_07845) - 1504181..1504423 (+) 243 WP_001252036.1 hypothetical protein -
  AB0R67_RS07845 (AB0R67_07850) - 1504439..1504783 (+) 345 WP_000786937.1 YppE family protein -
  AB0R67_RS07850 (AB0R67_07855) - 1504810..1505001 (-) 192 WP_000242652.1 YppF family protein -
  AB0R67_RS07855 (AB0R67_07860) - 1505179..1505736 (+) 558 WP_000487718.1 YppG family protein -
  AB0R67_RS07860 (AB0R67_07865) - 1505892..1506314 (+) 423 WP_000546292.1 CotD family spore coat protein -
  AB0R67_RS07865 (AB0R67_07870) - 1506371..1506925 (+) 555 WP_000862916.1 DUF1273 domain-containing protein -
  AB0R67_RS07870 (AB0R67_07875) gpsB 1507023..1507358 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23351.57 Da        Isoelectric Point: 9.4083

>NTDB_id=1020377 AB0R67_RS07825 WP_335446219.1 1502033..1502635(-) (recU) [Bacillus thuringiensis strain JJ1216]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEYGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1020377 AB0R67_RS07825 WP_335446219.1 1502033..1502635(-) (recU) [Bacillus thuringiensis strain JJ1216]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGTATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment