Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R67_RS06495 Genome accession   NZ_CP160237
Coordinates   1259182..1259505 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain JJ1216     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254182..1264505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS06470 (AB0R67_06475) - 1254472..1255758 (+) 1287 WP_098284174.1 D-alanyl-D-alanine carboxypeptidase family protein -
  AB0R67_RS06475 (AB0R67_06480) sipW 1255949..1256518 (+) 570 WP_000767802.1 signal peptidase I SipW -
  AB0R67_RS06480 (AB0R67_06485) - 1256583..1257170 (+) 588 WP_000172852.1 CalY family protein -
  AB0R67_RS06485 (AB0R67_06490) - 1257305..1258129 (+) 825 WP_141553421.1 DUF4047 domain-containing protein -
  AB0R67_RS06490 (AB0R67_06495) calY 1258516..1259109 (+) 594 WP_000053715.1 biofilm matrix protein CalY -
  AB0R67_RS06495 (AB0R67_06500) sinR 1259182..1259505 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  AB0R67_RS06500 (AB0R67_06505) - 1259585..1259719 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  AB0R67_RS06505 (AB0R67_06510) inhA1 1260062..1262449 (+) 2388 WP_061660516.1 M6 family metalloprotease immune inhibitor InhA1 -
  AB0R67_RS06510 (AB0R67_06515) - 1262621..1263988 (+) 1368 WP_061660517.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=1020375 AB0R67_RS06495 WP_000578885.1 1259182..1259505(-) (sinR) [Bacillus thuringiensis strain JJ1216]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1020375 AB0R67_RS06495 WP_000578885.1 1259182..1259505(-) (sinR) [Bacillus thuringiensis strain JJ1216]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment