Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQM53_RS00275 Genome accession   NZ_LS483361
Coordinates   36929..37693 (+) Length   254 a.a.
NCBI ID   WP_111714656.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31929..42693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS00260 (NCTC6179_00052) - 32787..33989 (+) 1203 WP_111714650.1 CHAP domain-containing protein -
  DQM53_RS00265 (NCTC6179_00053) - 34241..35500 (+) 1260 WP_111714653.1 transposase -
  DQM53_RS00270 (NCTC6179_00054) - 35743..36705 (+) 963 WP_003049033.1 ribose-phosphate diphosphokinase -
  DQM53_RS00275 (NCTC6179_00055) recO 36929..37693 (+) 765 WP_111714656.1 DNA repair protein RecO Machinery gene
  DQM53_RS00280 (NCTC6179_00056) plsX 37800..38807 (+) 1008 WP_111714659.1 phosphate acyltransferase PlsX -
  DQM53_RS00285 (NCTC6179_00057) - 38800..39042 (+) 243 WP_111714661.1 phosphopantetheine-binding protein -
  DQM53_RS00290 (NCTC6179_00058) purC 39208..39918 (+) 711 WP_111714664.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30015.25 Da        Isoelectric Point: 5.9450

>NTDB_id=1020366 DQM53_RS00275 WP_111714656.1 36929..37693(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INKDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=1020366 DQM53_RS00275 WP_111714656.1 36929..37693(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGCAGTTAAACGAGTCATTAGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATCCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATAAAGACCTTTTTCGACTTTCCTATGCGAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTGTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACCATTTCTTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAATTGTATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618