Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R69_RS13450 Genome accession   NZ_CP160234
Coordinates   2689072..2689452 (+) Length   126 a.a.
NCBI ID   WP_335349394.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2684072..2694452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS13440 (AB0R69_13440) - 2684563..2687706 (+) 3144 WP_335349367.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  AB0R69_RS13445 (AB0R69_13445) - 2687901..2688809 (+) 909 WP_335349368.1 trypsin-like serine protease -
  AB0R69_RS13450 (AB0R69_13450) nucA/comI 2689072..2689452 (+) 381 WP_335349394.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R69_RS13455 (AB0R69_13455) - 2689597..2690445 (+) 849 WP_144522640.1 STAS domain-containing protein -
  AB0R69_RS13460 (AB0R69_13460) - 2690477..2691019 (-) 543 WP_144522639.1 IseA DL-endopeptidase inhibitor family protein -
  AB0R69_RS13465 (AB0R69_13465) - 2691313..2691747 (+) 435 WP_335349369.1 hypothetical protein -
  AB0R69_RS13470 (AB0R69_13470) lexA 2691793..2692413 (-) 621 WP_117730431.1 transcriptional repressor LexA -
  AB0R69_RS13475 (AB0R69_13475) yneA 2692573..2692884 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  AB0R69_RS13480 (AB0R69_13480) - 2692902..2693549 (+) 648 WP_211063999.1 recombinase family protein -
  AB0R69_RS13485 (AB0R69_13485) - 2693619..2693849 (+) 231 WP_003211509.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13837.50 Da        Isoelectric Point: 7.9443

>NTDB_id=1020341 AB0R69_RS13450 WP_335349394.1 2689072..2689452(+) (nucA/comI) [Bacillus pumilus strain JJ1368]
MGTLLSGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSHVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1020341 AB0R69_RS13450 WP_335349394.1 2689072..2689452(+) (nucA/comI) [Bacillus pumilus strain JJ1368]
ATGGGCACGCTGTTAAGTGGATTTGGGGAGGAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCACATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCTTTAAAAGGCATTCCGACTAAACCAGGATTCGACCGAGATGAGTGGCCA
ATGGCCGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCTTCTGATAATAGGGGAGCAGGCTCATG
GGTTGGACACCAGATGAGTGGGTATCCTGATGGGAAAAGAATATTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment