Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AB0R69_RS11545 Genome accession   NZ_CP160234
Coordinates   2307449..2308030 (+) Length   193 a.a.
NCBI ID   WP_144523223.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2302449..2313030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS11515 (AB0R69_11515) dapD 2302571..2303281 (+) 711 WP_211063904.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AB0R69_RS11520 (AB0R69_11520) - 2303314..2304498 (+) 1185 WP_335349095.1 N-acetyldiaminopimelate deacetylase -
  AB0R69_RS11525 (AB0R69_11525) - 2304545..2304787 (+) 243 WP_003211408.1 YkuS family protein -
  AB0R69_RS11530 (AB0R69_11530) - 2304814..2305623 (-) 810 WP_144523224.1 mechanosensitive ion channel family protein -
  AB0R69_RS11535 (AB0R69_11535) ahpA 2305895..2306437 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  AB0R69_RS11540 (AB0R69_11540) - 2306520..2306978 (+) 459 WP_050945138.1 TlpA disulfide reductase family protein -
  AB0R69_RS11545 (AB0R69_11545) rok 2307449..2308030 (+) 582 WP_144523223.1 transcriptional regulator Rok Regulator
  AB0R69_RS11550 (AB0R69_11550) - 2308081..2308998 (-) 918 WP_144523222.1 sigmaE regulated sporulation protein -
  AB0R69_RS11555 (AB0R69_11555) - 2309083..2309664 (+) 582 WP_211063903.1 molybdenum cofactor guanylyltransferase -
  AB0R69_RS11560 (AB0R69_11560) - 2309694..2310710 (+) 1017 WP_144523220.1 thiazole biosynthesis adenylyltransferase ThiF -
  AB0R69_RS11565 (AB0R69_11565) glp 2310720..2311997 (+) 1278 WP_260983052.1 gephyrin-like molybdotransferase Glp -
  AB0R69_RS11570 (AB0R69_11570) mobB 2311979..2312503 (+) 525 WP_335349096.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AB0R69_RS11575 (AB0R69_11575) - 2312500..2312991 (+) 492 WP_335349097.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21818.76 Da        Isoelectric Point: 9.7309

>NTDB_id=1020335 AB0R69_RS11545 WP_144523223.1 2307449..2308030(+) (rok) [Bacillus pumilus strain JJ1368]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASTLGTGQLNSAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1020335 AB0R69_RS11545 WP_144523223.1 2307449..2308030(+) (rok) [Bacillus pumilus strain JJ1368]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAGCTGGCTGCACAGGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATTCTGCATCAACTTTAGGAACAGGGCAGCTAAACAGTGCGCCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTCGCCCTGGCTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATCAAAACGTTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

78.947

98.446

0.777

Multiple sequence alignment