Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AB0R69_RS11420 Genome accession   NZ_CP160234
Coordinates   2287574..2288035 (-) Length   153 a.a.
NCBI ID   WP_335349803.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2282574..2293035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS11395 (AB0R69_11395) - 2283183..2284067 (+) 885 WP_144523711.1 cation diffusion facilitator family transporter -
  AB0R69_RS11400 (AB0R69_11400) - 2284129..2284281 (-) 153 WP_186303696.1 hypothetical protein -
  AB0R69_RS11405 (AB0R69_11405) - 2284582..2285121 (+) 540 WP_144469948.1 RDD family protein -
  AB0R69_RS11410 (AB0R69_11410) - 2285247..2286557 (+) 1311 WP_211063918.1 MFS transporter -
  AB0R69_RS11415 (AB0R69_11415) - 2286631..2287539 (+) 909 WP_012009773.1 chemotaxis protein -
  AB0R69_RS11420 (AB0R69_11420) kre 2287574..2288035 (-) 462 WP_335349803.1 YkyB family protein Regulator
  AB0R69_RS11425 (AB0R69_11425) - 2288539..2288754 (-) 216 WP_144523236.1 hypothetical protein -
  AB0R69_RS11430 (AB0R69_11430) - 2288931..2289098 (+) 168 WP_186325104.1 hypothetical protein -
  AB0R69_RS11435 (AB0R69_11435) - 2289225..2290580 (+) 1356 WP_340992056.1 IS1182-like element ISBpu1 family transposase -
  AB0R69_RS11440 (AB0R69_11440) - 2290695..2291972 (-) 1278 WP_211063915.1 MFS transporter -
  AB0R69_RS11445 (AB0R69_11445) - 2292046..2292543 (-) 498 WP_335349089.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17751.37 Da        Isoelectric Point: 10.2452

>NTDB_id=1020334 AB0R69_RS11420 WP_335349803.1 2287574..2288035(-) (kre) [Bacillus pumilus strain JJ1368]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKPHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1020334 AB0R69_RS11420 WP_335349803.1 2287574..2288035(-) (kre) [Bacillus pumilus strain JJ1368]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTGTTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAGTCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAACCACATTATACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.778

Multiple sequence alignment