Detailed information NTG0102033

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VPUCM_RS03585
• Genome accession: NZ_CP007004
• Coordinates: 774704..777553 (+)
• Length: 949 a.a.
• NCBI ID: WP_025441403.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus UCM-V493
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 769704..782553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPUCM_RS03555 (VPUCM_0709)	bla	770506..771369 (-)	864	WP_025441399.1	class A beta-lactamase	-
VPUCM_RS25975 (VPUCM_0710)	-	771836..771946 (-)	111	Protein_684	UV protection and mutation protein	-
VPUCM_RS03565 (VPUCM_0711)	-	772186..772947 (+)	762	WP_025441400.1	IS5-like element ISSpu10 family transposase	-
VPUCM_RS03570 (VPUCM_0712)	-	773126..773389 (+)	264	WP_025441401.1	hypothetical protein	-
VPUCM_RS27655	-	773386..773498 (+)	113	Protein_687	phospholipase	-
VPUCM_RS03575	-	773724..774004 (+)	281	Protein_688	helix-turn-helix domain-containing protein	-
VPUCM_RS03580 (VPUCM_0713)	-	774037..774606 (+)	570	WP_025441402.1	Hsp20/alpha crystallin family protein	-
VPUCM_RS03585 (VPUCM_0714)	clpC	774704..777553 (+)	2850	WP_025441403.1	heat shock survival AAA family ATPase ClpK	Regulator
VPUCM_RS24535	-	777604..777867 (+)	264	Protein_691	cardiolipin synthase	-
VPUCM_RS27660	-	777908..778051 (+)	144	Protein_692	thiol reductase thioredoxin	-
VPUCM_RS03595 (VPUCM_0715)	-	778100..780511 (+)	2412	WP_235190509.1	bifunctional diguanylate cyclase/phosphodiesterase	-
VPUCM_RS03605 (VPUCM_0716)	-	780695..781165 (+)	471	WP_025441407.1	phosphate-starvation-inducible PsiE family protein	-
VPUCM_RS03610 (VPUCM_0717)	-	781173..782138 (+)	966	WP_025441408.1	zinc metalloprotease HtpX	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104510.52 Da
• Isoelectric Point: 5.8104

>NTDB_id=102033 VPUCM_RS03585 WP_025441403.1 774704..777553(+) (clpC) [Vibrio parahaemolyticus UCM-V493]
MVRKQCRICGQPATVRVEANLNGRHSTIQLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDLLRIGDDAPSMAA
DTDEVVDASFGESAPATAGTARRRGSGLASRISEQSEALLQEAAKHAAEFGRPEVDTEHLLLALADSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELEAELHQLRREQDYMASRKQYDKAAELGKRIEAKEAELKQ
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESVYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGSIGKADHASARWDDKAERVVFERQEPPVKPAEPEKPDAANAAETPPSDATKPARKKKSAGGES

Nucleotide

• Length: 2850 bp

>NTDB_id=102033 VPUCM_RS03585 WP_025441403.1 774704..777553(+) (clpC) [Vibrio parahaemolyticus UCM-V493]
ATGGTCAGAAAACAATGCCGAATCTGCGGCCAACCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
TATACAGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGTACCGTTTCGCCGCTGGAAGCCTTGTTCG
GCTCGCGCAGCGGGCTGTTCGAAGACTTCCTTGGCAGCGACCTCCTCCGCATCGGTGACGACGCACCGTCCATGGCGGCC
GATACCGACGAGGTCGTCGATGCCTCTTTCGGCGAATCTGCTCCCGCAACGGCGGGCACGGCACGCCGCCGCGGCAGTGG
GCTGGCCAGCCGTATCAGCGAACAGTCTGAGGCCCTGTTGCAGGAGGCCGCCAAACATGCCGCCGAATTTGGCCGCCCCG
AAGTCGATACCGAACACCTACTGTTGGCTCTCGCCGACAGCGACGTGGTGAAGACCATCTTAGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGGCAAATCGAATCCGAAGCCAAGCGTGGCGACAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCTTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTTC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAAGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCTGAACTGGATAA
ATACTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACCA
CCATCGAAGTGCTGGCCCGGCGCAAGAAAAACAACCCGGTGTTGATCGGTGAACCCGGCGTCGGCAAGACCGCCATCGTC
GAGGGGCTGGCACAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTCGAACTCAACATCAA
CGCCATGGTGGCAGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGCTGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAGCTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACGGTAGCACAGACCATGA
TGATTCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCCCGCCCGGTGGCCGTGCAAGAGCTGGAGGCCGAACTGCATCAGTTGCGGCGTGAGCAGGACT
ACATGGCCTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTCGGCAAGCGCATCGAGGCCAAAGAGGCAGAACTCAAGCAG
CTCGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGTAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCGGTGCGTGCGGTGGCCGATGCCGTGCGGCTGTCGCGCGCGGGCCTGCGCGAAGGCAGC
AAGCCAGTGGCCACCTTCCTGTTCCTCGGGCCGACGGGTGTGGGCAAGACCGAACTCGCCAAGGCACTGGCCGAGTCCGT
CTATGGCGATGAGGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGTGAACGCCATACCGTGGCACGCCTGGTGGGCG
CACCCCCGGGCTATGTCGGCTACGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCAAGCCCTACAGCGTGCTGCTG
CTCGACGAGATCGAGAAGGCTCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGATGACGGCCGCCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACGTCTAACCTGGGCTCGGACATTATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAAGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGTTGACCTTCGACCAGACCTTGATCGATCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTTGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCG
CGCGAGATGCTGGGTGGCAGTATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCGCCCGTGAAGCCGGCCGAACCTGAGAAGCCCGATGCCGCGAACGCGGCCGAGACGCCGCCGAGCG
ACGCGACCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGTGGCGAATCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.501	84.089	0.425
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.834	86.301	0.378
clpC	Streptococcus thermophilus LMD-9	41.99	86.828	0.365
clpC	Streptococcus thermophilus LMG 18311	41.9	86.512	0.362