Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R69_RS06625 Genome accession   NZ_CP160234
Coordinates   1284619..1285047 (-) Length   142 a.a.
NCBI ID   WP_335349591.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1279619..1290047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS06595 (AB0R69_06595) - 1279776..1280105 (+) 330 WP_144523356.1 YckD family protein -
  AB0R69_RS06600 (AB0R69_06600) - 1280153..1280917 (-) 765 WP_335349594.1 MBL fold metallo-hydrolase -
  AB0R69_RS06605 (AB0R69_06605) - 1281033..1281449 (+) 417 WP_186325098.1 Lrp/AsnC family transcriptional regulator -
  AB0R69_RS06610 (AB0R69_06610) - 1281479..1282285 (+) 807 WP_335349593.1 AAC(3) family N-acetyltransferase -
  AB0R69_RS06615 (AB0R69_06615) - 1282287..1282673 (-) 387 WP_224925624.1 competence protein ComJ -
  AB0R69_RS06620 (AB0R69_06620) - 1282794..1284491 (-) 1698 WP_335349592.1 methyl-accepting chemotaxis protein -
  AB0R69_RS06625 (AB0R69_06625) nucA/comI 1284619..1285047 (-) 429 WP_335349591.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R69_RS06630 (AB0R69_06630) - 1285415..1287484 (+) 2070 WP_335349590.1 hydantoinase/oxoprolinase family protein -
  AB0R69_RS06635 (AB0R69_06635) - 1287474..1289459 (+) 1986 WP_211063361.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15914.84 Da        Isoelectric Point: 5.5491

>NTDB_id=1020316 AB0R69_RS06625 WP_335349591.1 1284619..1285047(-) (nucA/comI) [Bacillus pumilus strain JJ1368]
MKLLKIILLLLLIVIGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1020316 AB0R69_RS06625 WP_335349591.1 1284619..1285047(-) (nucA/comI) [Bacillus pumilus strain JJ1368]
ATGAAACTTCTTAAAATTATTCTCTTGCTTTTACTGATCGTCATTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACGATTCACTTCCCATCAGATCGTTATCCCGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATTCCAACAAAGCGCGGATATGATCGTGATGAATGGCCTATGGCGATGTGTAAGGAAGGAGGAACAGGGGC
TTCAGTCAAGTATATTAGTCCTTCAGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAATTATCGGATGATCCCGATG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.942

85.211

0.57

Multiple sequence alignment