Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | AB0R69_RS05360 | Genome accession | NZ_CP160234 |
| Coordinates | 1049835..1052270 (+) | Length | 811 a.a. |
| NCBI ID | WP_003216969.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain JJ1368 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1044835..1057270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0R69_RS05345 (AB0R69_05345) | - | 1047706..1048170 (+) | 465 | WP_060697832.1 | CtsR family transcriptional regulator | - |
| AB0R69_RS05350 (AB0R69_05350) | - | 1048185..1048742 (+) | 558 | WP_034665655.1 | UvrB/UvrC motif-containing protein | - |
| AB0R69_RS05355 (AB0R69_05355) | - | 1048747..1049838 (+) | 1092 | WP_003217181.1 | protein arginine kinase | - |
| AB0R69_RS05360 (AB0R69_05360) | clpC | 1049835..1052270 (+) | 2436 | WP_003216969.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| AB0R69_RS05365 (AB0R69_05365) | radA | 1052364..1053743 (+) | 1380 | WP_034620767.1 | DNA repair protein RadA | Machinery gene |
| AB0R69_RS05370 (AB0R69_05370) | disA | 1053746..1054825 (+) | 1080 | WP_211064370.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| AB0R69_RS05375 (AB0R69_05375) | - | 1054978..1056078 (+) | 1101 | WP_211064369.1 | PIN/TRAM domain-containing protein | - |
| AB0R69_RS05380 (AB0R69_05380) | ispD | 1056092..1056781 (+) | 690 | WP_003217158.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| AB0R69_RS05385 (AB0R69_05385) | ispF | 1056785..1057261 (+) | 477 | WP_012008689.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90030.78 Da Isoelectric Point: 6.1821
>NTDB_id=1020314 AB0R69_RS05360 WP_003216969.1 1049835..1052270(+) (clpC) [Bacillus pumilus strain JJ1368]
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQQIVLDVEDG
EIVVKTTAATN
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQQIVLDVEDG
EIVVKTTAATN
Nucleotide
Download Length: 2436 bp
>NTDB_id=1020314 AB0R69_RS05360 WP_003216969.1 1049835..1052270(+) (clpC) [Bacillus pumilus strain JJ1368]
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAACATTGGTACTGAACACATTTTACTTGGTCTAGTACGTGAGGGTGAGGGCATCGCTGCAAAAGCGTTAGAAGCACTGG
GCCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCGAAGAAGGTCACTGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTTCTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTCCTGCAGCTTCTTGGCAGCAATGAAACGGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACCCCAACATTAGATAGCTTGGCAAGAGATTTAACAGCGATTGCGAAAGAAGACAGCTTGGACCCTGTCATTGGACGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTCCTAAGCAGAAGAACAAAAAACAACCCTGTGCTGATTGGTGAGCCTGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTGGCACAGCAAATTATTCATAATGAAGTGCCTGAAATTCTGCGTGATAAACGAGTG
ATGACGCTTGATATGGGAACCGTTGTAGCGGGAACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGCCAGGCAGGTAATATCATTCTCTTCATTGATGAGCTTCATACACTGATTGGTGCTGGTGGAGCTGAGGGTG
CGATTGACGCATCTAATATTCTAAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACAACATTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTAGATCAGCCATCAGTTGATGA
GAGTATTCAAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGAGTGTCCATTACAGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATCGATGAGGCAGGT
TCGAAAGTCCGTTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAGCTGGATGAAGTACGCAAGGA
AAAAGATGCGGCTGTCCAAAGTCAGGAATTTGAAAAAGCAGCTTCTCTTCGCGATACAGAGCAGCGTCTACGTGAAAAAG
TAGAAGTGACAAAGAAATCTTGGAAAGAAAAGCAAGGACAGGAGAATTCAGAGGTATCAGTAGATGATATCGCTATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCCCAAACCGAAACAGATAAGCTTTTAAATATGGAACAATTACT
CCATTCTCGTGTAATTGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCACGTGCTGGTCTAAAAG
ATCCAAAACGTCCAATCGGCTCATTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCA
GAGTCTATTTTCGGTGATGAAGAAGCGATGATCCGTATTGATATGTCAGAATACATGGAGAAACACTCTACATCTAGACT
TGTTGGGTCACCTCCAGGATATGTTGGCTATGAAGAAGGCGGACAATTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCGCATCCAGATGTATTCAACATCTTACTTCAAGTATTAGAAGATGGTCGTCTA
ACTGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAACTGAA
GCGAAATAAATATGTTGGTTTTAACGTGCAGGATGAAGGTCAAAATTACAAGGATATGAAAGGCAAAGTGATGGGCGAGT
TGAAACGTGCGTTCAGACCAGAATTCATCAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATCTA
AAAGAGATCGTGTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATTGAATTGACAGAAGC
AGCAAAAGCGAAGATAGCCGACGAAGGTGTAGACCTTGAGTACGGTGCGCGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCTGAGGAGCTTCTGAAGGGTAATATTGAAAAAGGTCAACAAATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAACATTGGTACTGAACACATTTTACTTGGTCTAGTACGTGAGGGTGAGGGCATCGCTGCAAAAGCGTTAGAAGCACTGG
GCCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCGAAGAAGGTCACTGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTTCTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTCCTGCAGCTTCTTGGCAGCAATGAAACGGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACCCCAACATTAGATAGCTTGGCAAGAGATTTAACAGCGATTGCGAAAGAAGACAGCTTGGACCCTGTCATTGGACGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTCCTAAGCAGAAGAACAAAAAACAACCCTGTGCTGATTGGTGAGCCTGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTGGCACAGCAAATTATTCATAATGAAGTGCCTGAAATTCTGCGTGATAAACGAGTG
ATGACGCTTGATATGGGAACCGTTGTAGCGGGAACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGCCAGGCAGGTAATATCATTCTCTTCATTGATGAGCTTCATACACTGATTGGTGCTGGTGGAGCTGAGGGTG
CGATTGACGCATCTAATATTCTAAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACAACATTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTAGATCAGCCATCAGTTGATGA
GAGTATTCAAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGAGTGTCCATTACAGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATCGATGAGGCAGGT
TCGAAAGTCCGTTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAGCTGGATGAAGTACGCAAGGA
AAAAGATGCGGCTGTCCAAAGTCAGGAATTTGAAAAAGCAGCTTCTCTTCGCGATACAGAGCAGCGTCTACGTGAAAAAG
TAGAAGTGACAAAGAAATCTTGGAAAGAAAAGCAAGGACAGGAGAATTCAGAGGTATCAGTAGATGATATCGCTATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCCCAAACCGAAACAGATAAGCTTTTAAATATGGAACAATTACT
CCATTCTCGTGTAATTGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCACGTGCTGGTCTAAAAG
ATCCAAAACGTCCAATCGGCTCATTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCA
GAGTCTATTTTCGGTGATGAAGAAGCGATGATCCGTATTGATATGTCAGAATACATGGAGAAACACTCTACATCTAGACT
TGTTGGGTCACCTCCAGGATATGTTGGCTATGAAGAAGGCGGACAATTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCGCATCCAGATGTATTCAACATCTTACTTCAAGTATTAGAAGATGGTCGTCTA
ACTGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAACTGAA
GCGAAATAAATATGTTGGTTTTAACGTGCAGGATGAAGGTCAAAATTACAAGGATATGAAAGGCAAAGTGATGGGCGAGT
TGAAACGTGCGTTCAGACCAGAATTCATCAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATCTA
AAAGAGATCGTGTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATTGAATTGACAGAAGC
AGCAAAAGCGAAGATAGCCGACGAAGGTGTAGACCTTGAGTACGGTGCGCGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCTGAGGAGCTTCTGAAGGGTAATATTGAAAAAGGTCAACAAATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
95.931 |
100 |
0.959 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.136 |
99.877 |
0.491 |
| clpC | Streptococcus thermophilus LMD-9 |
46.247 |
100 |
0.471 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.884 |
100 |
0.467 |
| clpC | Streptococcus pneumoniae Rx1 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus pneumoniae D39 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus mutans UA159 |
43.675 |
100 |
0.451 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.509 |
87.916 |
0.435 |
| clpE | Streptococcus mutans UA159 |
53.478 |
79.778 |
0.427 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae Rx1 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
52.713 |
79.531 |
0.419 |