Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AB0R69_RS04795 Genome accession   NZ_CP160234
Coordinates   946177..947289 (+) Length   370 a.a.
NCBI ID   WP_211062815.1    Uniprot ID   W6I0L5
Organism   Bacillus pumilus strain JJ1368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 941177..952289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS04770 (AB0R69_04770) rnpA 941928..942287 (-) 360 WP_003214983.1 ribonuclease P protein component -
  AB0R69_RS04775 (AB0R69_04775) rpmH 942366..942500 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  AB0R69_RS04780 (AB0R69_04780) dnaA 943121..944461 (+) 1341 WP_144486186.1 chromosomal replication initiator protein DnaA -
  AB0R69_RS04785 (AB0R69_04785) dnaN 944658..945794 (+) 1137 WP_041815072.1 DNA polymerase III subunit beta -
  AB0R69_RS04790 (AB0R69_04790) yaaA 945945..946160 (+) 216 WP_041815077.1 S4 domain-containing protein YaaA -
  AB0R69_RS04795 (AB0R69_04795) recF 946177..947289 (+) 1113 WP_211062815.1 DNA replication/repair protein RecF Machinery gene
  AB0R69_RS04800 (AB0R69_04800) remB 947307..947552 (+) 246 WP_041815080.1 extracellular matrix regulator RemB -
  AB0R69_RS04805 (AB0R69_04805) gyrB 947610..949526 (+) 1917 WP_335349447.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AB0R69_RS04810 (AB0R69_04810) gyrA 949759..952260 (+) 2502 WP_211062816.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42520.60 Da        Isoelectric Point: 7.3979

>NTDB_id=1020311 AB0R69_RS04795 WP_211062815.1 946177..947289(+) (recF) [Bacillus pumilus strain JJ1368]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHLGISRELETLTLQYHTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1020311 AB0R69_RS04795 WP_211062815.1 946177..947289(+) (recF) [Bacillus pumilus strain JJ1368]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGCTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTAAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGG
AATCACTACTTGAAACAATTGCAGACTAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCACAGCCGTTGCATTTGGGTA
TTTCTAGAGAGCTGGAAACACTCACGCTCCAATACCACACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGCTGTGGGGGCCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACTTGATACACGAAGAAATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGTATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6I0L5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

84.011

99.73

0.838

Multiple sequence alignment