Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB0R75_RS00255 Genome accession   NZ_CP160232
Coordinates   47053..47343 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1622     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42053..52343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R75_RS00215 (AB0R75_00215) - 42088..42417 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  AB0R75_RS00220 (AB0R75_00220) - 42430..42870 (+) 441 WP_211064374.1 YaaR family protein -
  AB0R75_RS00225 (AB0R75_00225) holB 42882..43871 (+) 990 WP_211064375.1 DNA polymerase III subunit delta' -
  AB0R75_RS00230 (AB0R75_00230) - 43874..44701 (+) 828 WP_012008643.1 stage 0 sporulation family protein -
  AB0R75_RS00235 (AB0R75_00235) yabA 44716..45069 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  AB0R75_RS00240 (AB0R75_00240) - 45125..45868 (+) 744 WP_012008644.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AB0R75_RS00245 (AB0R75_00245) - 45855..46151 (+) 297 WP_211064376.1 GIY-YIG nuclease family protein -
  AB0R75_RS00250 (AB0R75_00250) rsmI 46129..47007 (+) 879 WP_211064377.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AB0R75_RS00255 (AB0R75_00255) abrB 47053..47343 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB0R75_RS00260 (AB0R75_00260) metG 47864..49864 (+) 2001 WP_088000683.1 methionine--tRNA ligase -
  AB0R75_RS00265 (AB0R75_00265) - 49946..50713 (+) 768 WP_211064378.1 TatD family hydrolase -
  AB0R75_RS00270 (AB0R75_00270) - 50958..52160 (+) 1203 WP_211064379.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=1020237 AB0R75_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus pumilus strain JJ1622]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1020237 AB0R75_RS00255 WP_087975202.1 47053..47343(-) (abrB) [Bacillus pumilus strain JJ1622]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATTGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment