Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R72_RS02220 Genome accession   NZ_CP160229
Coordinates   426844..427281 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP46     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 421844..432281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R72_RS02195 (AB0R72_02195) - 422864..424000 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  AB0R72_RS02200 (AB0R72_02200) - 424015..424449 (+) 435 WP_007409358.1 RDD family protein -
  AB0R72_RS02205 (AB0R72_02205) - 424521..424844 (+) 324 WP_007409357.1 YckD family protein -
  AB0R72_RS02210 (AB0R72_02210) - 424948..426384 (+) 1437 WP_241457875.1 family 1 glycosylhydrolase -
  AB0R72_RS02215 (AB0R72_02215) nin/comJ 426425..426823 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  AB0R72_RS02220 (AB0R72_02220) nucA/comI 426844..427281 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R72_RS02225 (AB0R72_02225) hxlB 427639..428196 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  AB0R72_RS02230 (AB0R72_02230) hxlA 428193..428828 (-) 636 WP_060563063.1 3-hexulose-6-phosphate synthase -
  AB0R72_RS02235 (AB0R72_02235) - 429061..429423 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1020166 AB0R72_RS02220 WP_003156588.1 426844..427281(-) (nucA/comI) [Bacillus velezensis strain AP46]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1020166 AB0R72_RS02220 WP_003156588.1 426844..427281(-) (nucA/comI) [Bacillus velezensis strain AP46]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment