Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R86_RS08750 Genome accession   NZ_CP160227
Coordinates   1788570..1789004 (+) Length   144 a.a.
NCBI ID   WP_032866024.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ947     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1783570..1794004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R86_RS08745 (AB0R86_08745) - 1787070..1788281 (-) 1212 WP_335395149.1 cytochrome P450 -
  AB0R86_RS08750 (AB0R86_08750) nucA/comI 1788570..1789004 (+) 435 WP_032866024.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R86_RS08755 (AB0R86_08755) - 1789064..1789819 (+) 756 WP_003154084.1 YoaK family protein -
  AB0R86_RS08760 (AB0R86_08760) - 1789853..1790215 (-) 363 WP_007410383.1 hypothetical protein -
  AB0R86_RS08765 (AB0R86_08765) - 1790408..1791736 (-) 1329 WP_047935736.1 S8 family peptidase -
  AB0R86_RS08770 (AB0R86_08770) - 1791915..1792148 (+) 234 WP_015239897.1 hypothetical protein -
  AB0R86_RS08775 (AB0R86_08775) - 1792404..1793111 (+) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  AB0R86_RS08780 (AB0R86_08780) - 1793170..1793622 (+) 453 WP_335395147.1 OsmC family protein -
  AB0R86_RS08785 (AB0R86_08785) - 1793636..1793989 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=1020119 AB0R86_RS08750 WP_032866024.1 1788570..1789004(+) (nucA/comI) [Bacillus velezensis strain JJ947]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHTEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1020119 AB0R86_RS08750 WP_032866024.1 1788570..1789004(+) (nucA/comI) [Bacillus velezensis strain JJ947]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCTATTTCGGCAGGTCATACTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment