Detailed information NTG1020116

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R86_RS08215
• Genome accession: NZ_CP160227
• Coordinates: 1618637..1619416 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JJ947
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1613637..1624416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R86_RS08195 (AB0R86_08195)	trmFO	1614324..1615631 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R86_RS08200 (AB0R86_08200)	xerC	1615701..1616618 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
AB0R86_RS08205 (AB0R86_08205)	hslV	1616634..1617179 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB0R86_RS08210 (AB0R86_08210)	hslU	1617187..1618599 (+)	1413	WP_254894347.1	HslU--HslV peptidase ATPase subunit	-
AB0R86_RS08215 (AB0R86_08215)	codY	1618637..1619416 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R86_RS08220 (AB0R86_08220)	flgB	1619769..1620158 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB0R86_RS08225 (AB0R86_08225)	flgC	1620158..1620610 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
AB0R86_RS08230 (AB0R86_08230)	fliE	1620621..1620941 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R86_RS08235 (AB0R86_08235)	fliF	1620984..1622594 (+)	1611	WP_007409778.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R86_RS08240 (AB0R86_08240)	fliG	1622607..1623623 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R86_RS08245 (AB0R86_08245)	fliH	1623616..1624371 (+)	756	WP_335394915.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1020116 AB0R86_RS08215 WP_003154263.1 1618637..1619416(+) (codY) [Bacillus velezensis strain JJ947]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1020116 AB0R86_RS08215 WP_003154263.1 1618637..1619416(+) (codY) [Bacillus velezensis strain JJ947]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471