Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R77_RS14900 Genome accession   NZ_CP160226
Coordinates   2856139..2856780 (-) Length   213 a.a.
NCBI ID   WP_034282566.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1244     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2851139..2861780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS14865 (AB0R77_14865) - 2852265..2852696 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  AB0R77_RS14870 (AB0R77_14870) - 2852696..2853037 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  AB0R77_RS14875 (AB0R77_14875) - 2853030..2854508 (+) 1479 WP_024425940.1 Na+/H+ antiporter subunit D -
  AB0R77_RS14880 (AB0R77_14880) - 2854515..2854994 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  AB0R77_RS14885 (AB0R77_14885) - 2854994..2855275 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R77_RS14890 (AB0R77_14890) mnhG 2855259..2855633 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  AB0R77_RS14895 (AB0R77_14895) - 2855726..2856115 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  AB0R77_RS14900 (AB0R77_14900) comA 2856139..2856780 (-) 642 WP_034282566.1 response regulator transcription factor Regulator
  AB0R77_RS14905 (AB0R77_14905) comP 2856861..2859152 (-) 2292 WP_046313345.1 ATP-binding protein Regulator
  AB0R77_RS14910 (AB0R77_14910) comX 2859166..2859339 (-) 174 WP_046313343.1 competence pheromone ComX -
  AB0R77_RS14915 (AB0R77_14915) - 2859317..2860240 (-) 924 WP_046313342.1 polyprenyl synthetase family protein -
  AB0R77_RS14920 (AB0R77_14920) degQ 2860392..2860532 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AB0R77_RS14925 (AB0R77_14925) - 2861038..2861394 (+) 357 WP_041115816.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24163.56 Da        Isoelectric Point: 4.6397

>NTDB_id=1020068 AB0R77_RS14900 WP_034282566.1 2856139..2856780(-) (comA) [Bacillus safensis strain JJ1244]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1020068 AB0R77_RS14900 WP_034282566.1 2856139..2856780(-) (comA) [Bacillus safensis strain JJ1244]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGAGCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment