Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB0R77_RS11420 Genome accession   NZ_CP160226
Coordinates   2223271..2225004 (-) Length   577 a.a.
NCBI ID   WP_041117941.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1244     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2218271..2230004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS11400 (AB0R77_11400) - 2219148..2220248 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  AB0R77_RS11405 (AB0R77_11405) - 2220236..2220433 (-) 198 WP_024422934.1 hypothetical protein -
  AB0R77_RS11410 (AB0R77_11410) spo0A 2220705..2221508 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  AB0R77_RS11415 (AB0R77_11415) spoIVB 2221794..2223071 (-) 1278 WP_046311727.1 SpoIVB peptidase -
  AB0R77_RS11420 (AB0R77_11420) recN 2223271..2225004 (-) 1734 WP_041117941.1 DNA repair protein RecN Machinery gene
  AB0R77_RS11425 (AB0R77_11425) argR 2225038..2225487 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  AB0R77_RS11430 (AB0R77_11430) - 2225651..2226505 (-) 855 WP_041117943.1 TlyA family RNA methyltransferase -
  AB0R77_RS11435 (AB0R77_11435) dxs 2226502..2228403 (-) 1902 WP_041117945.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB0R77_RS11440 (AB0R77_11440) - 2228554..2229444 (-) 891 WP_041117947.1 polyprenyl synthetase family protein -
  AB0R77_RS11445 (AB0R77_11445) - 2229434..2229694 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64741.59 Da        Isoelectric Point: 4.7748

>NTDB_id=1020055 AB0R77_RS11420 WP_041117941.1 2223271..2225004(-) (recN) [Bacillus safensis strain JJ1244]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLELGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=1020055 AB0R77_RS11420 WP_041117941.1 2223271..2225004(-) (recN) [Bacillus safensis strain JJ1244]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTAACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTCAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCTGGGGGAAGATGAGAGGCTTC
AGGAAGAGCGACATCAAATCAGCAACTACGAAAAAATCTATTCTTCACTCCAAAACGCGTACAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAAATCAACGATGATTTGAAAAAGTT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TTGATCCGGCTCGTCTTGATTTTATTGAGTCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCTCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCAAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACTGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGT
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

76.083

100

0.761

Multiple sequence alignment