Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB0R77_RS10450 Genome accession   NZ_CP160226
Coordinates   2047017..2047652 (+) Length   211 a.a.
NCBI ID   WP_034280474.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1244     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2042017..2052652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS10410 (AB0R77_10410) - 2042163..2043281 (+) 1119 WP_231122787.1 NADH-dependent flavin oxidoreductase -
  AB0R77_RS10415 (AB0R77_10415) - 2043339..2043845 (-) 507 WP_046311568.1 PTS glucose transporter subunit IIA -
  AB0R77_RS10420 (AB0R77_10420) - 2044015..2044434 (+) 420 WP_034280483.1 Hsp20/alpha crystallin family protein -
  AB0R77_RS10425 (AB0R77_10425) - 2044455..2044916 (-) 462 WP_034280480.1 YppG family protein -
  AB0R77_RS10430 (AB0R77_10430) - 2045025..2045405 (-) 381 WP_224426683.1 YppE family protein -
  AB0R77_RS10435 (AB0R77_10435) - 2045455..2045691 (-) 237 WP_024428114.1 DUF5446 family protein -
  AB0R77_RS10440 (AB0R77_10440) sspM 2045886..2045990 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  AB0R77_RS10445 (AB0R77_10445) - 2046014..2046970 (-) 957 WP_046311571.1 DUF2515 domain-containing protein -
  AB0R77_RS10450 (AB0R77_10450) recU 2047017..2047652 (+) 636 WP_034280474.1 Holliday junction resolvase RecU Machinery gene
  AB0R77_RS10455 (AB0R77_10455) - 2047672..2050386 (+) 2715 WP_046311574.1 PBP1A family penicillin-binding protein -
  AB0R77_RS10460 (AB0R77_10460) - 2050423..2050932 (-) 510 WP_046311577.1 YpoC family protein -
  AB0R77_RS10465 (AB0R77_10465) nth 2050929..2051591 (-) 663 WP_034280464.1 endonuclease III -
  AB0R77_RS10470 (AB0R77_10470) - 2051609..2052313 (-) 705 WP_046311580.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.71 Da        Isoelectric Point: 9.8310

>NTDB_id=1020053 AB0R77_RS10450 WP_034280474.1 2047017..2047652(+) (recU) [Bacillus safensis strain JJ1244]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1020053 AB0R77_RS10450 WP_034280474.1 2047017..2047652(+) (recU) [Bacillus safensis strain JJ1244]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTATAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701

Multiple sequence alignment