Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R77_RS09005 Genome accession   NZ_CP160226
Coordinates   1764110..1764490 (+) Length   126 a.a.
NCBI ID   WP_044335941.1    Uniprot ID   A0AAP7UKB4
Organism   Bacillus safensis strain JJ1244     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1759110..1769490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS08995 (AB0R77_08995) - 1759605..1762748 (+) 3144 WP_046311196.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  AB0R77_RS09000 (AB0R77_09000) - 1762942..1763850 (+) 909 WP_024425124.1 trypsin-like serine protease -
  AB0R77_RS09005 (AB0R77_09005) nucA/comI 1764110..1764490 (+) 381 WP_044335941.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R77_RS09010 (AB0R77_09010) - 1764634..1765482 (+) 849 WP_046311199.1 STAS domain-containing protein -
  AB0R77_RS09015 (AB0R77_09015) - 1765516..1766058 (-) 543 WP_046311201.1 IseA DL-endopeptidase inhibitor family protein -
  AB0R77_RS09020 (AB0R77_09020) - 1766355..1766798 (+) 444 WP_046311203.1 hypothetical protein -
  AB0R77_RS09025 (AB0R77_09025) lexA 1766844..1767464 (-) 621 WP_034283422.1 transcriptional repressor LexA -
  AB0R77_RS09030 (AB0R77_09030) yneA 1767623..1767934 (+) 312 WP_034283425.1 cell division suppressor protein YneA -
  AB0R77_RS09035 (AB0R77_09035) - 1767952..1768599 (+) 648 WP_034283427.1 recombinase family protein -
  AB0R77_RS09040 (AB0R77_09040) - 1768669..1768899 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13727.41 Da        Isoelectric Point: 8.5068

>NTDB_id=1020052 AB0R77_RS09005 WP_044335941.1 1764110..1764490(+) (nucA/comI) [Bacillus safensis strain JJ1244]
MGTLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1020052 AB0R77_RS09005 WP_044335941.1 1764110..1764490(+) (nucA/comI) [Bacillus safensis strain JJ1244]
ATGGGCACGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTACAATATGTTAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATCAGCGGGTTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment