Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB0R77_RS06875 Genome accession   NZ_CP160226
Coordinates   1347568..1347846 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain JJ1244     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342568..1352846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS06850 (AB0R77_06850) - 1342664..1342939 (-) 276 WP_034281618.1 hypothetical protein -
  AB0R77_RS06855 (AB0R77_06855) - 1343083..1344702 (+) 1620 WP_024426884.1 ATP-binding cassette domain-containing protein -
  AB0R77_RS06860 (AB0R77_06860) - 1344738..1345970 (-) 1233 WP_046310819.1 aminopeptidase -
  AB0R77_RS06865 (AB0R77_06865) - 1346078..1346209 (-) 132 WP_003210922.1 protein YkpC -
  AB0R77_RS06870 (AB0R77_06870) mreBH 1346284..1347291 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  AB0R77_RS06875 (AB0R77_06875) abrB 1347568..1347846 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB0R77_RS06880 (AB0R77_06880) - 1347992..1349302 (+) 1311 WP_046310821.1 ATP-binding protein -
  AB0R77_RS06885 (AB0R77_06885) - 1349307..1350143 (+) 837 WP_046310824.1 gamma-glutamylcyclotransferase family protein -
  AB0R77_RS06890 (AB0R77_06890) - 1350181..1350849 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  AB0R77_RS06895 (AB0R77_06895) ade 1351112..1352842 (+) 1731 WP_046310827.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=1020047 AB0R77_RS06875 WP_024424746.1 1347568..1347846(+) (abrB) [Bacillus safensis strain JJ1244]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1020047 AB0R77_RS06875 WP_024424746.1 1347568..1347846(+) (abrB) [Bacillus safensis strain JJ1244]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAACTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment