Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R77_RS01960 Genome accession   NZ_CP160226
Coordinates   362353..362781 (-) Length   142 a.a.
NCBI ID   WP_046313814.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1244     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357353..367781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS01930 (AB0R77_01930) - 357515..357844 (+) 330 WP_024424311.1 YckD family protein -
  AB0R77_RS01935 (AB0R77_01935) - 357888..358652 (-) 765 WP_046313804.1 MBL fold metallo-hydrolase -
  AB0R77_RS01940 (AB0R77_01940) - 358768..359184 (+) 417 WP_180951418.1 Lrp/AsnC family transcriptional regulator -
  AB0R77_RS01945 (AB0R77_01945) - 359213..360019 (+) 807 WP_046313806.1 aminoglycoside N(3)-acetyltransferase -
  AB0R77_RS01950 (AB0R77_01950) - 360021..360407 (-) 387 WP_046313809.1 competence protein ComJ -
  AB0R77_RS01955 (AB0R77_01955) - 360528..362225 (-) 1698 WP_046313811.1 methyl-accepting chemotaxis protein -
  AB0R77_RS01960 (AB0R77_01960) nucA/comI 362353..362781 (-) 429 WP_046313814.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R77_RS01965 (AB0R77_01965) - 363149..365218 (+) 2070 WP_046313816.1 hydantoinase/oxoprolinase family protein -
  AB0R77_RS01970 (AB0R77_01970) - 365208..367196 (+) 1989 WP_046313819.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15929.88 Da        Isoelectric Point: 5.9135

>NTDB_id=1020027 AB0R77_RS01960 WP_046313814.1 362353..362781(-) (nucA/comI) [Bacillus safensis strain JJ1244]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVHPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1020027 AB0R77_RS01960 WP_046313814.1 362353..362781(-) (nucA/comI) [Bacillus safensis strain JJ1244]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCTATTTGTACAATTGACCGTAAAAATAGTGATGAGCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCGATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACACCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCAGACG
GCACAAGAATCCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.667

80.282

0.535

Multiple sequence alignment