Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BAMY6614_RS17160 Genome accession   NZ_CP006960
Coordinates   3610142..3610837 (-) Length   231 a.a.
NCBI ID   WP_014418686.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3605142..3615837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS17140 (BAMY6614_18140) - 3605524..3606243 (-) 720 WP_061862496.1 TIGR02206 family membrane protein -
  BAMY6614_RS17145 (BAMY6614_18145) - 3606350..3608290 (-) 1941 WP_032868344.1 FtsX-like permease family protein -
  BAMY6614_RS17150 (BAMY6614_18150) - 3608287..3609042 (-) 756 WP_007408812.1 ABC transporter ATP-binding protein -
  BAMY6614_RS17155 (BAMY6614_18155) - 3609145..3610149 (-) 1005 WP_061862497.1 sensor histidine kinase -
  BAMY6614_RS17160 (BAMY6614_18160) braR 3610142..3610837 (-) 696 WP_014418686.1 response regulator transcription factor Regulator
  BAMY6614_RS17165 (BAMY6614_18165) - 3610901..3612211 (-) 1311 WP_021494489.1 ABC transporter permease -
  BAMY6614_RS17170 (BAMY6614_18170) - 3612201..3612896 (-) 696 WP_007408816.1 ABC transporter ATP-binding protein -
  BAMY6614_RS17175 (BAMY6614_18175) - 3612912..3613892 (-) 981 WP_061862498.1 hypothetical protein -
  BAMY6614_RS17180 (BAMY6614_18180) - 3613929..3614915 (-) 987 WP_061862499.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26839.08 Da        Isoelectric Point: 7.1196

>NTDB_id=102002 BAMY6614_RS17160 WP_014418686.1 3610142..3610837(-) (braR) [Bacillus amyloliquefaciens UMAF6614]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFSEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=102002 BAMY6614_RS17160 WP_014418686.1 3610142..3610837(-) (braR) [Bacillus amyloliquefaciens UMAF6614]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAAGATTTCAGCCGTGTCATCCGGGAGTTTTCCGAAATTAAGCCTGATTTGGTAATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCATCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAGCTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCCGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385

Multiple sequence alignment