Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB0R65_RS05425 Genome accession   NZ_CP160225
Coordinates   1053785..1054363 (+) Length   192 a.a.
NCBI ID   WP_012117234.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ1284     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048785..1059363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R65_RS05405 (AB0R65_05405) - 1049287..1050579 (-) 1293 WP_007409192.1 globin-coupled sensor protein -
  AB0R65_RS05410 (AB0R65_05410) - 1050701..1052224 (-) 1524 WP_032866166.1 FAD-dependent oxidoreductase -
  AB0R65_RS05415 (AB0R65_05415) - 1052349..1053206 (+) 858 WP_032871127.1 SDR family oxidoreductase -
  AB0R65_RS05420 (AB0R65_05420) - 1053236..1053469 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  AB0R65_RS05425 (AB0R65_05425) comK 1053785..1054363 (+) 579 WP_012117234.1 competence protein ComK Regulator
  AB0R65_RS05430 (AB0R65_05430) - 1054491..1054676 (+) 186 WP_072588961.1 hypothetical protein -
  AB0R65_RS05435 (AB0R65_05435) - 1054680..1056056 (+) 1377 WP_072588962.1 hypothetical protein -
  AB0R65_RS05440 (AB0R65_05440) - 1056703..1057071 (+) 369 WP_012117235.1 iron chaperone -
  AB0R65_RS05445 (AB0R65_05445) - 1057098..1057469 (+) 372 WP_015239528.1 iron chaperone -
  AB0R65_RS05450 (AB0R65_05450) - 1057592..1058101 (+) 510 WP_015239529.1 mep operon protein MepB -
  AB0R65_RS05455 (AB0R65_05455) - 1058330..1059040 (-) 711 WP_015239530.1 YrpD family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.55 Da        Isoelectric Point: 8.1419

>NTDB_id=1019964 AB0R65_RS05425 WP_012117234.1 1053785..1054363(+) (comK) [Bacillus velezensis strain JJ1284]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1019964 AB0R65_RS05425 WP_012117234.1 1053785..1054363(+) (comK) [Bacillus velezensis strain JJ1284]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment