Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DQM51_RS01440 Genome accession   NZ_LS483356
Coordinates   241594..242043 (+) Length   149 a.a.
NCBI ID   WP_111713135.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8230     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 236594..247043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM51_RS01425 (NCTC8230_00286) - 238578..239249 (+) 672 WP_011017305.1 rhomboid family intramembrane serine protease -
  DQM51_RS01430 (NCTC8230_00287) galU 239348..240247 (-) 900 WP_002986125.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DQM51_RS01435 (NCTC8230_00288) - 240280..241296 (-) 1017 WP_002986123.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DQM51_RS01440 (NCTC8230_00289) rcrR 241594..242043 (+) 450 WP_111713135.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM51_RS01445 (NCTC8230_00290) - 242036..243742 (+) 1707 WP_031488680.1 ABC transporter ATP-binding protein -
  DQM51_RS01450 (NCTC8230_00291) - 243745..245529 (+) 1785 WP_002986115.1 ABC transporter ATP-binding protein -
  DQM51_RS01455 (NCTC8230_00292) - 245647..246414 (+) 768 WP_011054158.1 epoxyqueuosine reductase QueH -
  DQM51_RS01460 (NCTC8230_00293) - 246524..246970 (+) 447 WP_111713136.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17373.28 Da        Isoelectric Point: 9.5568

>NTDB_id=1019941 DQM51_RS01440 WP_111713135.1 241594..242043(+) (rcrR) [Streptococcus pyogenes strain NCTC8230]
MSQVISDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFIN
VMPSQVDKRYKQVVLAQVGRDKLPLLRECRKDIEHYFLKEITKEELLTAKKVIEQLKQNMLTYKGDNDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1019941 DQM51_RS01440 WP_111713135.1 241594..242043(+) (rcrR) [Streptococcus pyogenes strain NCTC8230]
ATGTCACAAGTGATAAGTGATTTACGTGAATTGATACATCAAATCGAACAAATTAGTGATGAGATTGCAAAAAAATATGA
TGTAGAGCATCTAGCAGGTCCTCAAGGTTATGTTCTTGTTTTTTTAGCTAAACACCAAAATCAAGAAATATTTGTCAAAG
ATATTGAAAAACAACTTCGTATCTCAAAGTCAGTTGCTAGTCATTTAGTGAAACGTATGGTCAAAAATGGGTTTATCAAT
GTGATGCCTTCCCAAGTGGATAAGCGTTATAAGCAAGTAGTGTTAGCGCAGGTTGGTAGAGATAAATTGCCTTTGTTGCG
GGAGTGTCGTAAGGATATCGAGCACTATTTTTTAAAAGAAATTACAAAAGAAGAGTTGCTGACAGCGAAAAAAGTAATTG
AACAGCTCAAGCAAAATATGCTAACTTATAAAGGAGACAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

47.857

93.96

0.45