Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AB0R87_RS11345 | Genome accession | NZ_CP160224 |
| Coordinates | 2247556..2247891 (+) | Length | 111 a.a. |
| NCBI ID | WP_012010555.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain JJ950 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2242556..2252891
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0R87_RS11325 (AB0R87_11325) | gcvT | 2243033..2244130 (-) | 1098 | WP_050943769.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AB0R87_RS11330 (AB0R87_11330) | - | 2244693..2246363 (+) | 1671 | WP_366595989.1 | SNF2-related protein | - |
| AB0R87_RS11335 (AB0R87_11335) | - | 2246378..2247175 (+) | 798 | WP_003217448.1 | YqhG family protein | - |
| AB0R87_RS11340 (AB0R87_11340) | - | 2247358..2247522 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| AB0R87_RS11345 (AB0R87_11345) | sinR | 2247556..2247891 (+) | 336 | WP_012010555.1 | transcriptional regulator SinR | Regulator |
| AB0R87_RS11350 (AB0R87_11350) | tasA | 2247959..2248759 (-) | 801 | WP_003217403.1 | biofilm matrix protein TasA | - |
| AB0R87_RS11355 (AB0R87_11355) | sipW | 2248817..2249389 (-) | 573 | WP_340866350.1 | signal peptidase I SipW | - |
| AB0R87_RS11360 (AB0R87_11360) | tapA | 2249441..2249968 (-) | 528 | WP_335365366.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB0R87_RS11365 (AB0R87_11365) | - | 2250268..2250546 (+) | 279 | WP_003217457.1 | DUF3889 domain-containing protein | - |
| AB0R87_RS11370 (AB0R87_11370) | - | 2250580..2250774 (-) | 195 | WP_034620826.1 | YqzE family protein | - |
| AB0R87_RS11375 (AB0R87_11375) | comGG | 2250834..2251217 (-) | 384 | WP_003217479.1 | competence type IV pilus minor pilin ComGG | - |
| AB0R87_RS11380 (AB0R87_11380) | comGF | 2251214..2251969 (-) | 756 | WP_366595992.1 | competence type IV pilus minor pilin ComGF | - |
| AB0R87_RS11385 (AB0R87_11385) | comGD | 2251953..2252399 (-) | 447 | WP_003217424.1 | competence type IV pilus minor pilin ComGD | - |
| AB0R87_RS11390 (AB0R87_11390) | comGC | 2252392..2252685 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13001.59 Da Isoelectric Point: 5.2831
>NTDB_id=1019919 AB0R87_RS11345 WP_012010555.1 2247556..2247891(+) (sinR) [Bacillus pumilus strain JJ950]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1019919 AB0R87_RS11345 WP_012010555.1 2247556..2247891(+) (sinR) [Bacillus pumilus strain JJ950]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |