Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0R87_RS08790 Genome accession   NZ_CP160224
Coordinates   1760578..1760958 (+) Length   126 a.a.
NCBI ID   WP_223251181.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1755578..1765958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS08780 (AB0R87_08780) - 1756067..1759210 (+) 3144 WP_366597513.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  AB0R87_RS08785 (AB0R87_08785) - 1759407..1760315 (+) 909 WP_226805234.1 trypsin-like serine protease -
  AB0R87_RS08790 (AB0R87_08790) nucA/comI 1760578..1760958 (+) 381 WP_223251181.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R87_RS08795 (AB0R87_08795) - 1761107..1761955 (+) 849 WP_366597514.1 STAS domain-containing protein -
  AB0R87_RS08800 (AB0R87_08800) - 1761988..1762530 (-) 543 WP_003211360.1 IseA DL-endopeptidase inhibitor family protein -
  AB0R87_RS08805 (AB0R87_08805) - 1762825..1763259 (+) 435 WP_003212431.1 hypothetical protein -
  AB0R87_RS08810 (AB0R87_08810) lexA 1763305..1763925 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  AB0R87_RS08815 (AB0R87_08815) yneA 1764085..1764396 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  AB0R87_RS08820 (AB0R87_08820) - 1764414..1765061 (+) 648 WP_003211322.1 recombinase family protein -
  AB0R87_RS08825 (AB0R87_08825) - 1765131..1765361 (+) 231 WP_003211509.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13785.42 Da        Isoelectric Point: 7.3831

>NTDB_id=1019915 AB0R87_RS08790 WP_223251181.1 1760578..1760958(+) (nucA/comI) [Bacillus pumilus strain JJ950]
MGTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1019915 AB0R87_RS08790 WP_223251181.1 1760578..1760958(+) (nucA/comI) [Bacillus pumilus strain JJ950]
ATGGGCACGCTGCTAGGTGGATTTGGGGAGGAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTTATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGCATTCCGACTAAGCCTGGATTCGACCGAGATGAGTGGCCG
ATGGCAGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCGTCTGATAATAGGGGAGCGGGCTCATG
GGTCGGACACCAGATGAGCGGGTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment