Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB0R87_RS07895 Genome accession   NZ_CP160224
Coordinates   1577196..1578098 (+) Length   300 a.a.
NCBI ID   WP_113386994.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1572196..1583098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS07875 (AB0R87_07875) - 1572862..1574598 (+) 1737 WP_253622621.1 glycosyltransferase -
  AB0R87_RS07880 (AB0R87_07880) - 1574595..1574870 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  AB0R87_RS07885 (AB0R87_07885) sucC 1575047..1576207 (+) 1161 WP_003211841.1 ADP-forming succinate--CoA ligase subunit beta -
  AB0R87_RS07890 (AB0R87_07890) sucD 1576230..1577132 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  AB0R87_RS07895 (AB0R87_07895) dprA 1577196..1578098 (+) 903 WP_113386994.1 DNA-processing protein DprA Machinery gene
  AB0R87_RS07900 (AB0R87_07900) topA 1578292..1580367 (+) 2076 WP_003212237.1 type I DNA topoisomerase -
  AB0R87_RS07905 (AB0R87_07905) trmFO 1580438..1581742 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0R87_RS07910 (AB0R87_07910) xerC 1581805..1582722 (+) 918 WP_003211704.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34124.46 Da        Isoelectric Point: 8.5961

>NTDB_id=1019911 AB0R87_RS07895 WP_113386994.1 1577196..1578098(+) (dprA) [Bacillus pumilus strain JJ950]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEEWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1019911 AB0R87_RS07895 WP_113386994.1 1577196..1578098(+) (dprA) [Bacillus pumilus strain JJ950]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGAGTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATTAGGAATAAAGGGAAAACGATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TCCCCATGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCCTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.236

96

0.377

Multiple sequence alignment