Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AB0R87_RS06960 Genome accession   NZ_CP160224
Coordinates   1394388..1394969 (+) Length   193 a.a.
NCBI ID   WP_003210851.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389388..1399969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS06930 (AB0R87_06930) dapD 1389510..1390220 (+) 711 WP_339161967.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AB0R87_RS06935 (AB0R87_06935) - 1390255..1391433 (+) 1179 WP_253622657.1 N-acetyldiaminopimelate deacetylase -
  AB0R87_RS06940 (AB0R87_06940) - 1391484..1391726 (+) 243 WP_003211408.1 YkuS family protein -
  AB0R87_RS06945 (AB0R87_06945) - 1391756..1392562 (-) 807 WP_339207079.1 mechanosensitive ion channel family protein -
  AB0R87_RS06950 (AB0R87_06950) ahpA 1392834..1393376 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  AB0R87_RS06955 (AB0R87_06955) - 1393459..1393917 (+) 459 WP_003211884.1 TlpA disulfide reductase family protein -
  AB0R87_RS06960 (AB0R87_06960) rok 1394388..1394969 (+) 582 WP_003210851.1 transcriptional regulator Rok Regulator
  AB0R87_RS06965 (AB0R87_06965) - 1395022..1395939 (-) 918 WP_050945137.1 hypothetical protein -
  AB0R87_RS06970 (AB0R87_06970) - 1396024..1396605 (+) 582 WP_321999026.1 molybdenum cofactor guanylyltransferase -
  AB0R87_RS06975 (AB0R87_06975) - 1396636..1397652 (+) 1017 WP_003211141.1 thiazole biosynthesis adenylyltransferase ThiF -
  AB0R87_RS06980 (AB0R87_06980) glp 1397662..1398939 (+) 1278 WP_335365019.1 gephyrin-like molybdotransferase Glp -
  AB0R87_RS06985 (AB0R87_06985) mobB 1398921..1399445 (+) 525 WP_003211651.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AB0R87_RS06990 (AB0R87_06990) - 1399442..1399933 (+) 492 WP_226805123.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21839.83 Da        Isoelectric Point: 9.7310

>NTDB_id=1019909 AB0R87_RS06960 WP_003210851.1 1394388..1394969(+) (rok) [Bacillus pumilus strain JJ950]
MFNEREALRLRLEQLNEAEVKVIREYQIERDTIYAKLRELDRHGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNAVSTLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1019909 AB0R87_RS06960 WP_003210851.1 1394388..1394969(+) (rok) [Bacillus pumilus strain JJ950]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATACGATTTATGCAAAATTAAGAGAATTAGACCGTCATGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATGCTGTATCAACTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment